miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11360 5' -59.4 NC_003084.1 + 96446 0.66 0.613944
Target:  5'- cGCCACCACCaUCGGUaCCAUUugCGa -3'
miRNA:   3'- uUGGUGGUGGaGGUCGaGGUGGugGU- -5'
11360 5' -59.4 NC_003084.1 + 62054 0.68 0.49229
Target:  5'- cGCCACCACCaCCGuuGCUaCCACUACa- -3'
miRNA:   3'- uUGGUGGUGGaGGU--CGA-GGUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 6377 0.68 0.515896
Target:  5'- uGACCACCACaaugUCCcguucgcgagacgauAGCUCCACCGgugcacccuCCAg -3'
miRNA:   3'- -UUGGUGGUGg---AGG---------------UCGAGGUGGU---------GGU- -5'
11360 5' -59.4 NC_003084.1 + 3276 0.68 0.531884
Target:  5'- cGCCAUCACUUCCcaagcucgaagAGCUCCGCUgguGCUg -3'
miRNA:   3'- uUGGUGGUGGAGG-----------UCGAGGUGG---UGGu -5'
11360 5' -59.4 NC_003084.1 + 104682 0.67 0.548048
Target:  5'- cACCAgCGCCgagUUCAGCUCCucggauacacgcuCCACCAu -3'
miRNA:   3'- uUGGUgGUGG---AGGUCGAGGu------------GGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 85767 0.67 0.562316
Target:  5'- gGACCGCaaaGCCUCaauuucacGCcuggCCACCGCCAa -3'
miRNA:   3'- -UUGGUGg--UGGAGgu------CGa---GGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 43482 0.67 0.582865
Target:  5'- cGCCGCCACCaaguguacCCAGUaa-GCCGCCAg -3'
miRNA:   3'- uUGGUGGUGGa-------GGUCGaggUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 51618 0.67 0.593197
Target:  5'- -uCCAuauCCugCUCCAuauuccGCUCCucgACCACCAg -3'
miRNA:   3'- uuGGU---GGugGAGGU------CGAGG---UGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 45693 0.67 0.607711
Target:  5'- cACCACCgaguaagcgccauuaACCUCCAGUUCCuCCGg-- -3'
miRNA:   3'- uUGGUGG---------------UGGAGGUCGAGGuGGUggu -5'
11360 5' -59.4 NC_003084.1 + 105362 0.69 0.482601
Target:  5'- cGACCugCG-CUCCAGCUCaCGCUcgGCCu -3'
miRNA:   3'- -UUGGugGUgGAGGUCGAG-GUGG--UGGu -5'
11360 5' -59.4 NC_003084.1 + 59243 0.69 0.482601
Target:  5'- cAACCACCACCU-CAGC-CCGCUAa-- -3'
miRNA:   3'- -UUGGUGGUGGAgGUCGaGGUGGUggu -5'
11360 5' -59.4 NC_003084.1 + 78210 0.69 0.463507
Target:  5'- -cCCGCgUACCgUCgAGCUCCACCGCgAa -3'
miRNA:   3'- uuGGUG-GUGG-AGgUCGAGGUGGUGgU- -5'
11360 5' -59.4 NC_003084.1 + 71148 0.79 0.110742
Target:  5'- cGACCGCCAgCUUCAGgUCCGCCACgCAg -3'
miRNA:   3'- -UUGGUGGUgGAGGUCgAGGUGGUG-GU- -5'
11360 5' -59.4 NC_003084.1 + 85175 0.76 0.164222
Target:  5'- uACUACCACCgacaauuuugUUCAGCUCCACCACg- -3'
miRNA:   3'- uUGGUGGUGG----------AGGUCGAGGUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 104769 0.74 0.245771
Target:  5'- cACCACCAcauCCUCCGG-UCCACCAauCCAu -3'
miRNA:   3'- uUGGUGGU---GGAGGUCgAGGUGGU--GGU- -5'
11360 5' -59.4 NC_003084.1 + 100978 0.73 0.277405
Target:  5'- cACCACCACCgCCg---CCACCACCAc -3'
miRNA:   3'- uUGGUGGUGGaGGucgaGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 12408 0.71 0.358203
Target:  5'- gGACCACCGCaauggggUCCAGCUCgCACUccuugGCCGc -3'
miRNA:   3'- -UUGGUGGUGg------AGGUCGAG-GUGG-----UGGU- -5'
11360 5' -59.4 NC_003084.1 + 65673 0.7 0.38292
Target:  5'- cGCCaagcuucacgaACCuCCUCCGGgUUCACCACCGg -3'
miRNA:   3'- uUGG-----------UGGuGGAGGUCgAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 71634 0.69 0.435629
Target:  5'- cAACCAUCgggGCUUCCAGUUCCGaUACCAg -3'
miRNA:   3'- -UUGGUGG---UGGAGGUCGAGGUgGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 41939 0.69 0.444815
Target:  5'- cGCCGCCACCauaCCuucGUcuUCCGCCACCc -3'
miRNA:   3'- uUGGUGGUGGa--GGu--CG--AGGUGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.