miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11371 5' -43.4 NC_003084.1 + 107907 0.67 0.999986
Target:  5'- cAGUUACccAAcgGUUGGCACC-CGGAc- -3'
miRNA:   3'- -UCGAUG--UUuaCAAUCGUGGuGUUUac -5'
11371 5' -43.4 NC_003084.1 + 105238 0.67 0.99998
Target:  5'- gAGgUGCAGGUGaagguuucGCGCCACcAGAUGg -3'
miRNA:   3'- -UCgAUGUUUACaau-----CGUGGUG-UUUAC- -5'
11371 5' -43.4 NC_003084.1 + 102572 0.7 0.999391
Target:  5'- uGGCUGCAGcAUGagGGCGCCGgGAu-- -3'
miRNA:   3'- -UCGAUGUU-UACaaUCGUGGUgUUuac -5'
11371 5' -43.4 NC_003084.1 + 97763 0.67 0.999984
Target:  5'- cGCUACGGuccacaucGCACCGCGGAUa -3'
miRNA:   3'- uCGAUGUUuacaau--CGUGGUGUUUAc -5'
11371 5' -43.4 NC_003084.1 + 87201 0.67 0.999972
Target:  5'- gAGaCUGaaaGGAUGggucgUGGCACCGCGGAa- -3'
miRNA:   3'- -UC-GAUg--UUUACa----AUCGUGGUGUUUac -5'
11371 5' -43.4 NC_003084.1 + 86959 0.72 0.996173
Target:  5'- cAGCUGCAAcUGUUcaucgAGCACCAUcgGUu -3'
miRNA:   3'- -UCGAUGUUuACAA-----UCGUGGUGuuUAc -5'
11371 5' -43.4 NC_003084.1 + 78166 0.69 0.999776
Target:  5'- ---aACGAAUGUUAGCGCaaaACAGAc- -3'
miRNA:   3'- ucgaUGUUUACAAUCGUGg--UGUUUac -5'
11371 5' -43.4 NC_003084.1 + 75434 0.74 0.98264
Target:  5'- gAGCaccACAAAUGUUGGguCCACuaGAGUGg -3'
miRNA:   3'- -UCGa--UGUUUACAAUCguGGUG--UUUAC- -5'
11371 5' -43.4 NC_003084.1 + 72113 0.66 0.999997
Target:  5'- cGCUGCAGAaccgacguUGgugAGCGCCGCc---- -3'
miRNA:   3'- uCGAUGUUU--------ACaa-UCGUGGUGuuuac -5'
11371 5' -43.4 NC_003084.1 + 70638 0.67 0.999986
Target:  5'- gAGCUGCAcGUGUUcaaAGC-CCACu---- -3'
miRNA:   3'- -UCGAUGUuUACAA---UCGuGGUGuuuac -5'
11371 5' -43.4 NC_003084.1 + 68984 0.68 0.999928
Target:  5'- aAGUUuaaAAAUGUgAGCACCACucAUGu -3'
miRNA:   3'- -UCGAug-UUUACAaUCGUGGUGuuUAC- -5'
11371 5' -43.4 NC_003084.1 + 68682 1.1 0.028429
Target:  5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3'
miRNA:   3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5'
11371 5' -43.4 NC_003084.1 + 68558 0.74 0.984765
Target:  5'- uGCUaACAuuUGUagcUAGCACCACAAAc- -3'
miRNA:   3'- uCGA-UGUuuACA---AUCGUGGUGUUUac -5'
11371 5' -43.4 NC_003084.1 + 68359 0.73 0.991216
Target:  5'- gGGCUACAGcuuggauacgcugGUGgaagugAGCACCGCAuGUGc -3'
miRNA:   3'- -UCGAUGUU-------------UACaa----UCGUGGUGUuUAC- -5'
11371 5' -43.4 NC_003084.1 + 62379 0.72 0.995447
Target:  5'- uGCUACGguacAGUGUUaaGGCugCACAAAg- -3'
miRNA:   3'- uCGAUGU----UUACAA--UCGugGUGUUUac -5'
11371 5' -43.4 NC_003084.1 + 58356 0.68 0.999871
Target:  5'- -uUUACGauGAUGUUGGCgcGCCGCAAAUc -3'
miRNA:   3'- ucGAUGU--UUACAAUCG--UGGUGUUUAc -5'
11371 5' -43.4 NC_003084.1 + 55350 0.66 0.999993
Target:  5'- gAGCUGCAAAauuu-GCACCGCcAGUu -3'
miRNA:   3'- -UCGAUGUUUacaauCGUGGUGuUUAc -5'
11371 5' -43.4 NC_003084.1 + 54164 0.74 0.984765
Target:  5'- cGGCUACGAcuacgGGCACCACGGGa- -3'
miRNA:   3'- -UCGAUGUUuacaaUCGUGGUGUUUac -5'
11371 5' -43.4 NC_003084.1 + 52987 0.71 0.997804
Target:  5'- uGCUAUAAAUGguggUAGCACCGg----- -3'
miRNA:   3'- uCGAUGUUUACa---AUCGUGGUguuuac -5'
11371 5' -43.4 NC_003084.1 + 49684 0.78 0.912918
Target:  5'- cAGCUAaagcUAAAUGUUGGCACCACc---- -3'
miRNA:   3'- -UCGAU----GUUUACAAUCGUGGUGuuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.