Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11372 | 5' | -43.4 | NC_003084.1 | + | 49156 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 49241 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 49326 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 68682 | 1.1 | 0.028429 |
Target: 5'- uAGCUACAAAUGUUAGCACCACAAAUGu -3' miRNA: 3'- -UCGAUGUUUACAAUCGUGGUGUUUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 49684 | 0.78 | 0.912918 |
Target: 5'- cAGCUAaagcUAAAUGUUGGCACCACc---- -3' miRNA: 3'- -UCGAU----GUUUACAAUCGUGGUGuuuac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 49354 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 49438 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 49269 | 0.74 | 0.977461 |
Target: 5'- uAGCUAaaccaagcaacuuUAAAUGUUAGCACCACc---- -3' miRNA: 3'- -UCGAU-------------GUUUACAAUCGUGGUGuuuac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 6377 | 0.74 | 0.977731 |
Target: 5'- gAGCUGCAAAU--UGGCACCAUuggacaGGGUGa -3' miRNA: 3'- -UCGAUGUUUAcaAUCGUGGUG------UUUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 75434 | 0.74 | 0.98264 |
Target: 5'- gAGCaccACAAAUGUUGGguCCACuaGAGUGg -3' miRNA: 3'- -UCGa--UGUUUACAAUCguGGUG--UUUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 68558 | 0.74 | 0.984765 |
Target: 5'- uGCUaACAuuUGUagcUAGCACCACAAAc- -3' miRNA: 3'- uCGA-UGUuuACA---AUCGUGGUGUUUac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 54164 | 0.74 | 0.984765 |
Target: 5'- cGGCUACGAcuacgGGCACCACGGGa- -3' miRNA: 3'- -UCGAUGUUuacaaUCGUGGUGUUUac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 68359 | 0.73 | 0.991216 |
Target: 5'- gGGCUACAGcuuggauacgcugGUGgaagugAGCACCGCAuGUGc -3' miRNA: 3'- -UCGAUGUU-------------UACaa----UCGUGGUGUuUAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 62379 | 0.72 | 0.995447 |
Target: 5'- uGCUACGguacAGUGUUaaGGCugCACAAAg- -3' miRNA: 3'- uCGAUGU----UUACAA--UCGugGUGUUUac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 86959 | 0.72 | 0.996173 |
Target: 5'- cAGCUGCAAcUGUUcaucgAGCACCAUcgGUu -3' miRNA: 3'- -UCGAUGUUuACAA-----UCGUGGUGuuUAc -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 52987 | 0.71 | 0.997804 |
Target: 5'- uGCUAUAAAUGguggUAGCACCGg----- -3' miRNA: 3'- uCGAUGUUUACa---AUCGUGGUguuuac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 46414 | 0.71 | 0.998197 |
Target: 5'- uAGCUcGCuGAAUGUUAcGCACCGCAc--- -3' miRNA: 3'- -UCGA-UG-UUUACAAU-CGUGGUGUuuac -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 1803 | 0.7 | 0.99904 |
Target: 5'- cAGUUugAAccgucGUGUUAGCcCCACGAAUc -3' miRNA: 3'- -UCGAugUU-----UACAAUCGuGGUGUUUAc -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 37802 | 0.7 | 0.999233 |
Target: 5'- uAGCaccGCAAAUGUgGGCcCCACAAaaGUGg -3' miRNA: 3'- -UCGa--UGUUUACAaUCGuGGUGUU--UAC- -5' |
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11372 | 5' | -43.4 | NC_003084.1 | + | 102572 | 0.7 | 0.999391 |
Target: 5'- uGGCUGCAGcAUGagGGCGCCGgGAu-- -3' miRNA: 3'- -UCGAUGUU-UACaaUCGUGGUgUUuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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