miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 31674 0.66 0.977697
Target:  5'- gGCCCAacCCGAGGUAUauguggaucCCGAguGCGAGg -3'
miRNA:   3'- aCGGGU--GGCUUUAUGgu-------GGCU--UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 34670 0.66 0.976679
Target:  5'- cGCCCAUCGGAuccacaguucgucUACCguguagagucGCUGGACGAGu -3'
miRNA:   3'- aCGGGUGGCUUu------------AUGG----------UGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 106307 0.66 0.9801
Target:  5'- gUGUCCACCGAGA-ACCGCaucaaauggcgUGAacuauACAAGg -3'
miRNA:   3'- -ACGGGUGGCUUUaUGGUG-----------GCU-----UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 27136 0.66 0.986156
Target:  5'- cGCaCCAUCGAAcgguuUGCCGguuauggguUCGAACAAGu -3'
miRNA:   3'- aCG-GGUGGCUUu----AUGGU---------GGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 88690 0.66 0.986156
Target:  5'- gGCCCcaaaaagaugACCGAugaccaacuGGUGCCGCUGAAgcccauCAAGa -3'
miRNA:   3'- aCGGG----------UGGCU---------UUAUGGUGGCUU------GUUC- -5'
11385 3' -50.7 NC_003084.1 + 53918 0.66 0.986156
Target:  5'- -cUUCACCGGAGUAUUACgacuCGGACGAGa -3'
miRNA:   3'- acGGGUGGCUUUAUGGUG----GCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 23730 0.66 0.98432
Target:  5'- cGCCCACCGAGAUca-AUUGGGCc-- -3'
miRNA:   3'- aCGGGUGGCUUUAuggUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 2290 0.66 0.977697
Target:  5'- aGCUgUACaCGAuGGUAcCCACCGAACGGGa -3'
miRNA:   3'- aCGG-GUG-GCU-UUAU-GGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 3553 0.66 0.977697
Target:  5'- gUGCCCACUuGAAccaCACCGAACc-- -3'
miRNA:   3'- -ACGGGUGGcUUUaugGUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 47349 0.66 0.9801
Target:  5'- gGCUCACCauGAUGCCAC--AACAAGu -3'
miRNA:   3'- aCGGGUGGcuUUAUGGUGgcUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 47263 0.66 0.984127
Target:  5'- cGUgCCACUGGAGccauuacUGCaCGCCGAACAGu -3'
miRNA:   3'- aCG-GGUGGCUUU-------AUG-GUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 25319 0.67 0.962408
Target:  5'- gGCUaACCGguAUaaaGCCGuCCGAGCAGGg -3'
miRNA:   3'- aCGGgUGGCuuUA---UGGU-GGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 40614 0.67 0.975087
Target:  5'- cGCCgACCG-GGUGCCuucUCGGACAGu -3'
miRNA:   3'- aCGGgUGGCuUUAUGGu--GGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 60679 0.67 0.972261
Target:  5'- cUGCUgGCCGGAgugaacauccGUACCACCucGCGGc -3'
miRNA:   3'- -ACGGgUGGCUU----------UAUGGUGGcuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 36728 0.67 0.972261
Target:  5'- gUGCCCAUCGAuugGCCucaGCUGuGCGAa -3'
miRNA:   3'- -ACGGGUGGCUuuaUGG---UGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 103847 0.67 0.972261
Target:  5'- aGCCCgGgUGGAGcuCCACCGAGCGGu -3'
miRNA:   3'- aCGGG-UgGCUUUauGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 94931 0.67 0.969211
Target:  5'- aGCCC-CaCGAGGgccACCACCGGAUc-- -3'
miRNA:   3'- aCGGGuG-GCUUUa--UGGUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 22406 0.67 0.962043
Target:  5'- aGCCCcgcucgauggaggGCCGG--UGCCACCGGcCAGa -3'
miRNA:   3'- aCGGG-------------UGGCUuuAUGGUGGCUuGUUc -5'
11385 3' -50.7 NC_003084.1 + 93550 0.67 0.962408
Target:  5'- cGCaCCAUCG-AGUGCCACuCGggUAc- -3'
miRNA:   3'- aCG-GGUGGCuUUAUGGUG-GCuuGUuc -5'
11385 3' -50.7 NC_003084.1 + 89676 0.67 0.962408
Target:  5'- cGUUCACCGGAGcGCCAagaCGAGCu-- -3'
miRNA:   3'- aCGGGUGGCUUUaUGGUg--GCUUGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.