Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11385 | 3' | -50.7 | NC_003084.1 | + | 67614 | 1.1 | 0.00539 |
Target: 5'- uUGCCCACCGAAAUACCACCGAACAAGa -3' miRNA: 3'- -ACGGGUGGCUUUAUGGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 53432 | 0.81 | 0.331724 |
Target: 5'- gUGUCCaACCGAGAgcgcaacucgGCCGCCGGACAAGc -3' miRNA: 3'- -ACGGG-UGGCUUUa---------UGGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 107224 | 0.75 | 0.634633 |
Target: 5'- aGUCCACCGcAGAUugCACCGGAgcuacccgaaccCAAGg -3' miRNA: 3'- aCGGGUGGC-UUUAugGUGGCUU------------GUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 102878 | 0.73 | 0.731097 |
Target: 5'- gUGCUCACauugguCGGAAUACCGCUGuACAAGu -3' miRNA: 3'- -ACGGGUG------GCUUUAUGGUGGCuUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 6393 | 0.73 | 0.76593 |
Target: 5'- gGCCCGugcCCGAGGUgagcugcaaauuggcACCAUUGGACAGGg -3' miRNA: 3'- aCGGGU---GGCUUUA---------------UGGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 25394 | 0.73 | 0.76593 |
Target: 5'- gGUCCACCGAgcacgggucccggacGcauAUAUCGCCGAACAAa -3' miRNA: 3'- aCGGGUGGCU---------------U---UAUGGUGGCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 46316 | 0.73 | 0.771928 |
Target: 5'- cGCCCACCGGuGGUugUACCGAu---- -3' miRNA: 3'- aCGGGUGGCU-UUAugGUGGCUuguuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 85388 | 0.72 | 0.791544 |
Target: 5'- cGCUguCCGAGAUgggGCUGCCGAGCAc- -3' miRNA: 3'- aCGGguGGCUUUA---UGGUGGCUUGUuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 96077 | 0.72 | 0.801115 |
Target: 5'- gGUCCGCCucGAAcGCCACCGAAUAAu -3' miRNA: 3'- aCGGGUGGc-UUUaUGGUGGCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 90832 | 0.72 | 0.819729 |
Target: 5'- cGCCCACCGuugguGUGuaACCGAACGc- -3' miRNA: 3'- aCGGGUGGCuu---UAUggUGGCUUGUuc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 97084 | 0.71 | 0.870677 |
Target: 5'- aGCUgGCCGAuuuggugAUgGCCGAGCAGGu -3' miRNA: 3'- aCGGgUGGCUuua----UGgUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 89372 | 0.71 | 0.85458 |
Target: 5'- aGCUgguuuCGCCGggGUGCCACuugCGGGCAAa -3' miRNA: 3'- aCGG-----GUGGCuuUAUGGUG---GCUUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 17624 | 0.7 | 0.878367 |
Target: 5'- cGCUCACCGAcaggGCCGCCaacuCGAGg -3' miRNA: 3'- aCGGGUGGCUuua-UGGUGGcuu-GUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 31820 | 0.7 | 0.878367 |
Target: 5'- aGCCCGCgGugGUGCCaACCGAguccgGCAAc -3' miRNA: 3'- aCGGGUGgCuuUAUGG-UGGCU-----UGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 91579 | 0.69 | 0.912383 |
Target: 5'- aGCuUCGCCGGAAUaugcugaACCACCGGugguccgcuccuGCGAGg -3' miRNA: 3'- aCG-GGUGGCUUUA-------UGGUGGCU------------UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 77902 | 0.69 | 0.919151 |
Target: 5'- gUGCCCuccuCCGAugugugGCCACCGGucaugAUGAGg -3' miRNA: 3'- -ACGGGu---GGCUuua---UGGUGGCU-----UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 63040 | 0.69 | 0.919151 |
Target: 5'- cGCCgGCUGGGAUccGCCACUuuuACAAGg -3' miRNA: 3'- aCGGgUGGCUUUA--UGGUGGcu-UGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 68673 | 0.69 | 0.930624 |
Target: 5'- gUGCCCACCcaguGUuagcACCACCG-ACAAc -3' miRNA: 3'- -ACGGGUGGcuu-UA----UGGUGGCuUGUUc -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 22265 | 0.69 | 0.930624 |
Target: 5'- gGCCgguggCACCGGcccuCCAUCGAGCGGGg -3' miRNA: 3'- aCGG-----GUGGCUuuauGGUGGCUUGUUC- -5' |
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11385 | 3' | -50.7 | NC_003084.1 | + | 98649 | 0.69 | 0.919151 |
Target: 5'- -aCCUGCCGGAG-ACC-CUGAGCAAGa -3' miRNA: 3'- acGGGUGGCUUUaUGGuGGCUUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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