miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 66742 0.69 0.935956
Target:  5'- gGCCCGCaUGAuguUGCCGCCuGGAUAAu -3'
miRNA:   3'- aCGGGUG-GCUuu-AUGGUGG-CUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 72153 0.68 0.94102
Target:  5'- aGCgUACCGAAccACCGCCGcuuGCGAc -3'
miRNA:   3'- aCGgGUGGCUUuaUGGUGGCu--UGUUc -5'
11385 3' -50.7 NC_003084.1 + 33339 0.68 0.94102
Target:  5'- cGCCCAUCacacggGCCACCGucGACAAa -3'
miRNA:   3'- aCGGGUGGcuuua-UGGUGGC--UUGUUc -5'
11385 3' -50.7 NC_003084.1 + 90394 0.68 0.94102
Target:  5'- gGUCCACCGuuAcACCGCUGGugGGc -3'
miRNA:   3'- aCGGGUGGCuuUaUGGUGGCUugUUc -5'
11385 3' -50.7 NC_003084.1 + 79217 0.68 0.945818
Target:  5'- gUGcCCCGCCGGugcuAUAUCGCCaAACGAu -3'
miRNA:   3'- -AC-GGGUGGCUu---UAUGGUGGcUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 103921 0.68 0.945818
Target:  5'- gGCCCGCCauaGAGAuauacacggguUACCACCG-GCGGa -3'
miRNA:   3'- aCGGGUGG---CUUU-----------AUGGUGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 100907 0.68 0.945818
Target:  5'- cGCCC-CCaAGAgccCCACCGGugGAGu -3'
miRNA:   3'- aCGGGuGGcUUUau-GGUGGCUugUUC- -5'
11385 3' -50.7 NC_003084.1 + 61004 0.68 0.958642
Target:  5'- aGCaCCACCGAAcgACCGCUuguACcAGg -3'
miRNA:   3'- aCG-GGUGGCUUuaUGGUGGcu-UGuUC- -5'
11385 3' -50.7 NC_003084.1 + 101786 0.68 0.960178
Target:  5'- aGCCaCGCCGAAaacuucguuuagcaaAcUGCCACCGAcCGAu -3'
miRNA:   3'- aCGG-GUGGCUU---------------U-AUGGUGGCUuGUUc -5'
11385 3' -50.7 NC_003084.1 + 22406 0.67 0.962043
Target:  5'- aGCCCcgcucgauggaggGCCGG--UGCCACCGGcCAGa -3'
miRNA:   3'- aCGGG-------------UGGCUuuAUGGUGGCUuGUUc -5'
11385 3' -50.7 NC_003084.1 + 25319 0.67 0.962408
Target:  5'- gGCUaACCGguAUaaaGCCGuCCGAGCAGGg -3'
miRNA:   3'- aCGGgUGGCuuUA---UGGU-GGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 93550 0.67 0.962408
Target:  5'- cGCaCCAUCG-AGUGCCACuCGggUAc- -3'
miRNA:   3'- aCG-GGUGGCuUUAUGGUG-GCuuGUuc -5'
11385 3' -50.7 NC_003084.1 + 89676 0.67 0.962408
Target:  5'- cGUUCACCGGAGcGCCAagaCGAGCu-- -3'
miRNA:   3'- aCGGGUGGCUUUaUGGUg--GCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 6052 0.67 0.962408
Target:  5'- uUGUCC-CCGAGGUGCCcagcugcaaGCUGAACu-- -3'
miRNA:   3'- -ACGGGuGGCUUUAUGG---------UGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 62121 0.67 0.965929
Target:  5'- gGCCgACuccugcuaCGAAAUACCACgCGAGCu-- -3'
miRNA:   3'- aCGGgUG--------GCUUUAUGGUG-GCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 94919 0.67 0.96727
Target:  5'- uUGCUCACCGAAAgUGCCAagcuguacugcaccuUCGAcuCGAGg -3'
miRNA:   3'- -ACGGGUGGCUUU-AUGGU---------------GGCUu-GUUC- -5'
11385 3' -50.7 NC_003084.1 + 94931 0.67 0.969211
Target:  5'- aGCCC-CaCGAGGgccACCACCGGAUc-- -3'
miRNA:   3'- aCGGGuG-GCUUUa--UGGUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 60679 0.67 0.972261
Target:  5'- cUGCUgGCCGGAgugaacauccGUACCACCucGCGGc -3'
miRNA:   3'- -ACGGgUGGCUU----------UAUGGUGGcuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 36728 0.67 0.972261
Target:  5'- gUGCCCAUCGAuugGCCucaGCUGuGCGAa -3'
miRNA:   3'- -ACGGGUGGCUuuaUGG---UGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 103847 0.67 0.972261
Target:  5'- aGCCCgGgUGGAGcuCCACCGAGCGGu -3'
miRNA:   3'- aCGGG-UgGCUUUauGGUGGCUUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.