miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 2290 0.66 0.977697
Target:  5'- aGCUgUACaCGAuGGUAcCCACCGAACGGGa -3'
miRNA:   3'- aCGG-GUG-GCU-UUAU-GGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 3553 0.66 0.977697
Target:  5'- gUGCCCACUuGAAccaCACCGAACc-- -3'
miRNA:   3'- -ACGGGUGGcUUUaugGUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 6052 0.67 0.962408
Target:  5'- uUGUCC-CCGAGGUGCCcagcugcaaGCUGAACu-- -3'
miRNA:   3'- -ACGGGuGGCUUUAUGG---------UGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 6393 0.73 0.76593
Target:  5'- gGCCCGugcCCGAGGUgagcugcaaauuggcACCAUUGGACAGGg -3'
miRNA:   3'- aCGGGU---GGCUUUA---------------UGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 9743 0.67 0.972261
Target:  5'- cGUCCACCuug--GCCGCCGAcuCGGGc -3'
miRNA:   3'- aCGGGUGGcuuuaUGGUGGCUu-GUUC- -5'
11385 3' -50.7 NC_003084.1 + 9848 0.67 0.975087
Target:  5'- cGCCC-UCGggGccACCACCG-ACAAc -3'
miRNA:   3'- aCGGGuGGCuuUa-UGGUGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 17624 0.7 0.878367
Target:  5'- cGCUCACCGAcaggGCCGCCaacuCGAGg -3'
miRNA:   3'- aCGGGUGGCUuua-UGGUGGcuu-GUUC- -5'
11385 3' -50.7 NC_003084.1 + 17684 0.67 0.976157
Target:  5'- cGCUCGCCGucugcuucucauUACCACCGAcCGu- -3'
miRNA:   3'- aCGGGUGGCuuu---------AUGGUGGCUuGUuc -5'
11385 3' -50.7 NC_003084.1 + 22265 0.69 0.930624
Target:  5'- gGCCgguggCACCGGcccuCCAUCGAGCGGGg -3'
miRNA:   3'- aCGG-----GUGGCUuuauGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 22406 0.67 0.962043
Target:  5'- aGCCCcgcucgauggaggGCCGG--UGCCACCGGcCAGa -3'
miRNA:   3'- aCGGG-------------UGGCUuuAUGGUGGCUuGUUc -5'
11385 3' -50.7 NC_003084.1 + 23730 0.66 0.98432
Target:  5'- cGCCCACCGAGAUca-AUUGGGCc-- -3'
miRNA:   3'- aCGGGUGGCUUUAuggUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 25319 0.67 0.962408
Target:  5'- gGCUaACCGguAUaaaGCCGuCCGAGCAGGg -3'
miRNA:   3'- aCGGgUGGCuuUA---UGGU-GGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 25394 0.73 0.76593
Target:  5'- gGUCCACCGAgcacgggucccggacGcauAUAUCGCCGAACAAa -3'
miRNA:   3'- aCGGGUGGCU---------------U---UAUGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 27136 0.66 0.986156
Target:  5'- cGCaCCAUCGAAcgguuUGCCGguuauggguUCGAACAAGu -3'
miRNA:   3'- aCG-GGUGGCUUu----AUGGU---------GGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 31674 0.66 0.977697
Target:  5'- gGCCCAacCCGAGGUAUauguggaucCCGAguGCGAGg -3'
miRNA:   3'- aCGGGU--GGCUUUAUGgu-------GGCU--UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 31820 0.7 0.878367
Target:  5'- aGCCCGCgGugGUGCCaACCGAguccgGCAAc -3'
miRNA:   3'- aCGGGUGgCuuUAUGG-UGGCU-----UGUUc -5'
11385 3' -50.7 NC_003084.1 + 33339 0.68 0.94102
Target:  5'- cGCCCAUCacacggGCCACCGucGACAAa -3'
miRNA:   3'- aCGGGUGGcuuua-UGGUGGC--UUGUUc -5'
11385 3' -50.7 NC_003084.1 + 34670 0.66 0.976679
Target:  5'- cGCCCAUCGGAuccacaguucgucUACCguguagagucGCUGGACGAGu -3'
miRNA:   3'- aCGGGUGGCUUu------------AUGG----------UGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 36728 0.67 0.972261
Target:  5'- gUGCCCAUCGAuugGCCucaGCUGuGCGAa -3'
miRNA:   3'- -ACGGGUGGCUuuaUGG---UGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 40614 0.67 0.975087
Target:  5'- cGCCgACCG-GGUGCCuucUCGGACAGu -3'
miRNA:   3'- aCGGgUGGCuUUAUGGu--GGCUUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.