miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 3553 0.66 0.977697
Target:  5'- gUGCCCACUuGAAccaCACCGAACc-- -3'
miRNA:   3'- -ACGGGUGGcUUUaugGUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 93550 0.67 0.962408
Target:  5'- cGCaCCAUCG-AGUGCCACuCGggUAc- -3'
miRNA:   3'- aCG-GGUGGCuUUAUGGUG-GCuuGUuc -5'
11385 3' -50.7 NC_003084.1 + 62121 0.67 0.965929
Target:  5'- gGCCgACuccugcuaCGAAAUACCACgCGAGCu-- -3'
miRNA:   3'- aCGGgUG--------GCUUUAUGGUG-GCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 94931 0.67 0.969211
Target:  5'- aGCCC-CaCGAGGgccACCACCGGAUc-- -3'
miRNA:   3'- aCGGGuG-GCUUUa--UGGUGGCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 103847 0.67 0.972261
Target:  5'- aGCCCgGgUGGAGcuCCACCGAGCGGu -3'
miRNA:   3'- aCGGG-UgGCUUUauGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 36728 0.67 0.972261
Target:  5'- gUGCCCAUCGAuugGCCucaGCUGuGCGAa -3'
miRNA:   3'- -ACGGGUGGCUuuaUGG---UGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 60679 0.67 0.972261
Target:  5'- cUGCUgGCCGGAgugaacauccGUACCACCucGCGGc -3'
miRNA:   3'- -ACGGgUGGCUU----------UAUGGUGGcuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 40614 0.67 0.975087
Target:  5'- cGCCgACCG-GGUGCCuucUCGGACAGu -3'
miRNA:   3'- aCGGgUGGCuUUAUGGu--GGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 34670 0.66 0.976679
Target:  5'- cGCCCAUCGGAuccacaguucgucUACCguguagagucGCUGGACGAGu -3'
miRNA:   3'- aCGGGUGGCUUu------------AUGG----------UGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 89676 0.67 0.962408
Target:  5'- cGUUCACCGGAGcGCCAagaCGAGCu-- -3'
miRNA:   3'- aCGGGUGGCUUUaUGGUg--GCUUGuuc -5'
11385 3' -50.7 NC_003084.1 + 61004 0.68 0.958642
Target:  5'- aGCaCCACCGAAcgACCGCUuguACcAGg -3'
miRNA:   3'- aCG-GGUGGCUUuaUGGUGGcu-UGuUC- -5'
11385 3' -50.7 NC_003084.1 + 100907 0.68 0.945818
Target:  5'- cGCCC-CCaAGAgccCCACCGGugGAGu -3'
miRNA:   3'- aCGGGuGGcUUUau-GGUGGCUugUUC- -5'
11385 3' -50.7 NC_003084.1 + 102878 0.73 0.731097
Target:  5'- gUGCUCACauugguCGGAAUACCGCUGuACAAGu -3'
miRNA:   3'- -ACGGGUG------GCUUUAUGGUGGCuUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 46316 0.73 0.771928
Target:  5'- cGCCCACCGGuGGUugUACCGAu---- -3'
miRNA:   3'- aCGGGUGGCU-UUAugGUGGCUuguuc -5'
11385 3' -50.7 NC_003084.1 + 85388 0.72 0.791544
Target:  5'- cGCUguCCGAGAUgggGCUGCCGAGCAc- -3'
miRNA:   3'- aCGGguGGCUUUA---UGGUGGCUUGUuc -5'
11385 3' -50.7 NC_003084.1 + 97084 0.71 0.870677
Target:  5'- aGCUgGCCGAuuuggugAUgGCCGAGCAGGu -3'
miRNA:   3'- aCGGgUGGCUuua----UGgUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 31820 0.7 0.878367
Target:  5'- aGCCCGCgGugGUGCCaACCGAguccgGCAAc -3'
miRNA:   3'- aCGGGUGgCuuUAUGG-UGGCU-----UGUUc -5'
11385 3' -50.7 NC_003084.1 + 22265 0.69 0.930624
Target:  5'- gGCCgguggCACCGGcccuCCAUCGAGCGGGg -3'
miRNA:   3'- aCGG-----GUGGCUuuauGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 68673 0.69 0.930624
Target:  5'- gUGCCCACCcaguGUuagcACCACCG-ACAAc -3'
miRNA:   3'- -ACGGGUGGcuu-UA----UGGUGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 72153 0.68 0.94102
Target:  5'- aGCgUACCGAAccACCGCCGcuuGCGAc -3'
miRNA:   3'- aCGgGUGGCUUuaUGGUGGCu--UGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.