miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11385 3' -50.7 NC_003084.1 + 53432 0.81 0.331724
Target:  5'- gUGUCCaACCGAGAgcgcaacucgGCCGCCGGACAAGc -3'
miRNA:   3'- -ACGGG-UGGCUUUa---------UGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 101786 0.68 0.960178
Target:  5'- aGCCaCGCCGAAaacuucguuuagcaaAcUGCCACCGAcCGAu -3'
miRNA:   3'- aCGG-GUGGCUU---------------U-AUGGUGGCUuGUUc -5'
11385 3' -50.7 NC_003084.1 + 25319 0.67 0.962408
Target:  5'- gGCUaACCGguAUaaaGCCGuCCGAGCAGGg -3'
miRNA:   3'- aCGGgUGGCuuUA---UGGU-GGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 106307 0.66 0.9801
Target:  5'- gUGUCCACCGAGA-ACCGCaucaaauggcgUGAacuauACAAGg -3'
miRNA:   3'- -ACGGGUGGCUUUaUGGUG-----------GCU-----UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 96077 0.72 0.801115
Target:  5'- gGUCCGCCucGAAcGCCACCGAAUAAu -3'
miRNA:   3'- aCGGGUGGc-UUUaUGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 90832 0.72 0.819729
Target:  5'- cGCCCACCGuugguGUGuaACCGAACGc- -3'
miRNA:   3'- aCGGGUGGCuu---UAUggUGGCUUGUuc -5'
11385 3' -50.7 NC_003084.1 + 17624 0.7 0.878367
Target:  5'- cGCUCACCGAcaggGCCGCCaacuCGAGg -3'
miRNA:   3'- aCGGGUGGCUuua-UGGUGGcuu-GUUC- -5'
11385 3' -50.7 NC_003084.1 + 91579 0.69 0.912383
Target:  5'- aGCuUCGCCGGAAUaugcugaACCACCGGugguccgcuccuGCGAGg -3'
miRNA:   3'- aCG-GGUGGCUUUA-------UGGUGGCU------------UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 98649 0.69 0.919151
Target:  5'- -aCCUGCCGGAG-ACC-CUGAGCAAGa -3'
miRNA:   3'- acGGGUGGCUUUaUGGuGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 79217 0.68 0.945818
Target:  5'- gUGcCCCGCCGGugcuAUAUCGCCaAACGAu -3'
miRNA:   3'- -AC-GGGUGGCUu---UAUGGUGGcUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 90394 0.68 0.94102
Target:  5'- gGUCCACCGuuAcACCGCUGGugGGc -3'
miRNA:   3'- aCGGGUGGCuuUaUGGUGGCUugUUc -5'
11385 3' -50.7 NC_003084.1 + 63040 0.69 0.919151
Target:  5'- cGCCgGCUGGGAUccGCCACUuuuACAAGg -3'
miRNA:   3'- aCGGgUGGCUUUA--UGGUGGcu-UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 107224 0.75 0.634633
Target:  5'- aGUCCACCGcAGAUugCACCGGAgcuacccgaaccCAAGg -3'
miRNA:   3'- aCGGGUGGC-UUUAugGUGGCUU------------GUUC- -5'
11385 3' -50.7 NC_003084.1 + 33339 0.68 0.94102
Target:  5'- cGCCCAUCacacggGCCACCGucGACAAa -3'
miRNA:   3'- aCGGGUGGcuuua-UGGUGGC--UUGUUc -5'
11385 3' -50.7 NC_003084.1 + 25394 0.73 0.76593
Target:  5'- gGUCCACCGAgcacgggucccggacGcauAUAUCGCCGAACAAa -3'
miRNA:   3'- aCGGGUGGCU---------------U---UAUGGUGGCUUGUUc -5'
11385 3' -50.7 NC_003084.1 + 77902 0.69 0.919151
Target:  5'- gUGCCCuccuCCGAugugugGCCACCGGucaugAUGAGg -3'
miRNA:   3'- -ACGGGu---GGCUuua---UGGUGGCU-----UGUUC- -5'
11385 3' -50.7 NC_003084.1 + 103921 0.68 0.945818
Target:  5'- gGCCCGCCauaGAGAuauacacggguUACCACCG-GCGGa -3'
miRNA:   3'- aCGGGUGG---CUUU-----------AUGGUGGCuUGUUc -5'
11385 3' -50.7 NC_003084.1 + 22406 0.67 0.962043
Target:  5'- aGCCCcgcucgauggaggGCCGG--UGCCACCGGcCAGa -3'
miRNA:   3'- aCGGG-------------UGGCUuuAUGGUGGCUuGUUc -5'
11385 3' -50.7 NC_003084.1 + 6393 0.73 0.76593
Target:  5'- gGCCCGugcCCGAGGUgagcugcaaauuggcACCAUUGGACAGGg -3'
miRNA:   3'- aCGGGU---GGCUUUA---------------UGGUGGCUUGUUC- -5'
11385 3' -50.7 NC_003084.1 + 89372 0.71 0.85458
Target:  5'- aGCUgguuuCGCCGggGUGCCACuugCGGGCAAa -3'
miRNA:   3'- aCGG-----GUGGCuuUAUGGUG---GCUUGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.