miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11387 3' -50.4 NC_003084.1 + 48899 0.66 0.986811
Target:  5'- aAGCAacucuuGGCGGucGACCgGGGUUGGGUu -3'
miRNA:   3'- aUUGUg-----UCGCUu-UUGGgUUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 12258 0.66 0.986811
Target:  5'- aAGCGCcGUGAAggUuCCAuuUCGGGCc -3'
miRNA:   3'- aUUGUGuCGCUUuuG-GGUucAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 25491 0.66 0.986293
Target:  5'- cGAUACAGCuguaccaacgcaccGGCCCGccaccguGUCGGGCa -3'
miRNA:   3'- aUUGUGUCGcuu-----------UUGGGUu------CAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 66997 0.66 0.985025
Target:  5'- uUAGCGCA-CGAGucUCCAcGUCcGGGCg -3'
miRNA:   3'- -AUUGUGUcGCUUuuGGGUuCAG-CCCG- -5'
11387 3' -50.4 NC_003084.1 + 41413 0.66 0.985025
Target:  5'- -cACACuGCGGAcgcuGCuCCAGGcgaCGGGCc -3'
miRNA:   3'- auUGUGuCGCUUu---UG-GGUUCa--GCCCG- -5'
11387 3' -50.4 NC_003084.1 + 104532 0.66 0.985025
Target:  5'- -cACGCAGCcguAGCCCA-GUCGaGCu -3'
miRNA:   3'- auUGUGUCGcuuUUGGGUuCAGCcCG- -5'
11387 3' -50.4 NC_003084.1 + 101321 0.66 0.983061
Target:  5'- -cGCACGuaaCGAcgGCCCAGGUgGuGGCc -3'
miRNA:   3'- auUGUGUc--GCUuuUGGGUUCAgC-CCG- -5'
11387 3' -50.4 NC_003084.1 + 102238 0.66 0.982435
Target:  5'- gUAACAUGGacaacACCCGguacuaucugcuggAGUCGGGCa -3'
miRNA:   3'- -AUUGUGUCgcuuuUGGGU--------------UCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 77029 0.67 0.975999
Target:  5'- cAGCACAGCGcAAAgacGCUCGAuuccaUCGGGUu -3'
miRNA:   3'- aUUGUGUCGC-UUU---UGGGUUc----AGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 57246 0.67 0.975999
Target:  5'- cAGCACGGcCGAAAGCuCCaAAGUUuccuGGCg -3'
miRNA:   3'- aUUGUGUC-GCUUUUG-GG-UUCAGc---CCG- -5'
11387 3' -50.4 NC_003084.1 + 95065 0.67 0.973224
Target:  5'- gGAUcCGGUGguGGCCCucGUgGGGCu -3'
miRNA:   3'- aUUGuGUCGCuuUUGGGuuCAgCCCG- -5'
11387 3' -50.4 NC_003084.1 + 33682 0.67 0.973224
Target:  5'- cAACGcCAGCGAAcauuCUCGGGuccUCGGGUa -3'
miRNA:   3'- aUUGU-GUCGCUUuu--GGGUUC---AGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 20333 0.67 0.973224
Target:  5'- gUAGCAaAGCGAAgcugcaGACgaCCAAGUCuGGCa -3'
miRNA:   3'- -AUUGUgUCGCUU------UUG--GGUUCAGcCCG- -5'
11387 3' -50.4 NC_003084.1 + 83011 0.67 0.973224
Target:  5'- aGACGCaaGGCGGAugaagaaaucGACCCGAGUCccaGCa -3'
miRNA:   3'- aUUGUG--UCGCUU----------UUGGGUUCAGcc-CG- -5'
11387 3' -50.4 NC_003084.1 + 54156 0.67 0.970224
Target:  5'- -uGCACgAGUGGu-GCCCAAGguggucCGGGUa -3'
miRNA:   3'- auUGUG-UCGCUuuUGGGUUCa-----GCCCG- -5'
11387 3' -50.4 NC_003084.1 + 72249 0.67 0.964936
Target:  5'- aAACACaauguacggcucgauGGUGAAugugaccguGCCCcAGUUGGGCg -3'
miRNA:   3'- aUUGUG---------------UCGCUUu--------UGGGuUCAGCCCG- -5'
11387 3' -50.4 NC_003084.1 + 59523 0.68 0.959796
Target:  5'- -cGCugAGCuGAAAauuGCCCAAGcUUGGGa -3'
miRNA:   3'- auUGugUCG-CUUU---UGGGUUC-AGCCCg -5'
11387 3' -50.4 NC_003084.1 + 71377 0.68 0.95941
Target:  5'- aUAGCAgucgccgUAGUGuGAGgCCAAGUgGGGCg -3'
miRNA:   3'- -AUUGU-------GUCGCuUUUgGGUUCAgCCCG- -5'
11387 3' -50.4 NC_003084.1 + 43173 0.68 0.951587
Target:  5'- -uGCGCAGCGGuaugaauauGGCCCucGAGgguaaauaugCGGGCa -3'
miRNA:   3'- auUGUGUCGCUu--------UUGGG--UUCa---------GCCCG- -5'
11387 3' -50.4 NC_003084.1 + 71377 0.68 0.951587
Target:  5'- -uGCACAGCGA--GCCCcAGUUGuccGCa -3'
miRNA:   3'- auUGUGUCGCUuuUGGGuUCAGCc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.