miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 18804 0.67 0.465455
Target:  5'- cGCagagCGCCCUGcCGCagCGACucGCCACg -3'
miRNA:   3'- -CGa---GCGGGAC-GUGaaGCUGc-CGGUGg -5'
11403 3' -58.1 NC_003085.1 + 24128 0.67 0.465455
Target:  5'- aGCgcgCGCCaucCACcuugUCGGUGGCCACCa -3'
miRNA:   3'- -CGa--GCGGgacGUGa---AGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26204 0.67 0.462505
Target:  5'- aGCUgCGCCUugUGCGCgggCGgcgcggugcgaagcGCGGCgGCCg -3'
miRNA:   3'- -CGA-GCGGG--ACGUGaa-GC--------------UGCCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 47509 0.67 0.455659
Target:  5'- uGUcCGCCaCUGCGau---ACGGCCACCg -3'
miRNA:   3'- -CGaGCGG-GACGUgaagcUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 37842 0.67 0.455659
Target:  5'- cCUUGCCCUgguaGCGCUgccugCGcUGGCCgGCCa -3'
miRNA:   3'- cGAGCGGGA----CGUGAa----GCuGCCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 47445 0.67 0.455659
Target:  5'- uGCUCcauGUCCUGCGCgucgaagUCGAacCGGuCCGCg -3'
miRNA:   3'- -CGAG---CGGGACGUGa------AGCU--GCC-GGUGg -5'
11403 3' -58.1 NC_003085.1 + 41316 0.67 0.455659
Target:  5'- cGUUCGCCUgaUGCGCggcgcUUGAgcaGGuCCACCa -3'
miRNA:   3'- -CGAGCGGG--ACGUGa----AGCUg--CC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 15605 0.68 0.445977
Target:  5'- -gUCGCCgUGCAgUUgacuaCGugGGCCggugGCCg -3'
miRNA:   3'- cgAGCGGgACGUgAA-----GCugCCGG----UGG- -5'
11403 3' -58.1 NC_003085.1 + 38221 0.68 0.445976
Target:  5'- gGCUCGUgcaCUcucgacggcaGCACgUCGGCGGUgGCCa -3'
miRNA:   3'- -CGAGCGg--GA----------CGUGaAGCUGCCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 3848 0.68 0.432615
Target:  5'- --cUGCCCauccaggaccacgGCGCgUCGACGGCgCGCCc -3'
miRNA:   3'- cgaGCGGGa------------CGUGaAGCUGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 21616 0.68 0.426961
Target:  5'- cGCgagCGaCCC-GCGCga-GACGGCCAUg -3'
miRNA:   3'- -CGa--GC-GGGaCGUGaagCUGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 32100 0.68 0.417636
Target:  5'- uGCUCGCUggcgUUGCACUgaGGUGGCuCGCCa -3'
miRNA:   3'- -CGAGCGG----GACGUGAagCUGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 19433 0.68 0.417636
Target:  5'- uGCUgGCCCUGgaagcCGCggaCGACgucgccaaGGCCGCCc -3'
miRNA:   3'- -CGAgCGGGAC-----GUGaa-GCUG--------CCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 34254 0.68 0.408436
Target:  5'- cCUCGCCCacuuccgcgGCGCggCGcUGGCgCACCg -3'
miRNA:   3'- cGAGCGGGa--------CGUGaaGCuGCCG-GUGG- -5'
11403 3' -58.1 NC_003085.1 + 34417 0.69 0.399363
Target:  5'- gGCUUugGCCCUGgGCUgCGGCuugGGCCgGCCc -3'
miRNA:   3'- -CGAG--CGGGACgUGAaGCUG---CCGG-UGG- -5'
11403 3' -58.1 NC_003085.1 + 12040 0.69 0.399363
Target:  5'- cGCUCGCUagccGCACUggCGcauCGGUCACUa -3'
miRNA:   3'- -CGAGCGGga--CGUGAa-GCu--GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 45648 0.69 0.399363
Target:  5'- uGCUCGCCgUGCACaacaucgCGAacgcuccgaGGCCcCCc -3'
miRNA:   3'- -CGAGCGGgACGUGaa-----GCUg--------CCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 47720 0.69 0.396666
Target:  5'- uGCUgCGCCUgcugacgggcgcggUGCGCguagcgucgcaaUUCGACGGCCAg- -3'
miRNA:   3'- -CGA-GCGGG--------------ACGUG------------AAGCUGCCGGUgg -5'
11403 3' -58.1 NC_003085.1 + 14946 0.69 0.39042
Target:  5'- aCUCGCggaaCUGCGCgaagCGcuGCGGcCCACCu -3'
miRNA:   3'- cGAGCGg---GACGUGaa--GC--UGCC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 37134 0.69 0.372932
Target:  5'- --aCGCCggGCACggCGACGGCgggCACCc -3'
miRNA:   3'- cgaGCGGgaCGUGaaGCUGCCG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.