miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 27678 0.7 0.184603
Target:  5'- gGCGGCGacguGCugGUgcugucgcgucuGGGCGUCCGCCc- -3'
miRNA:   3'- aCGCCGC----CGugCG------------CCUGCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 28066 0.66 0.325554
Target:  5'- aGCaGGCGGC-CGaUGGugaGUCCGCUGg -3'
miRNA:   3'- aCG-CCGCCGuGC-GCCug-CAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 28238 0.68 0.256164
Target:  5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3'
miRNA:   3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 28518 0.67 0.26252
Target:  5'- gGCGGUGGaCGCGUcaGGGCGaaUCCGCgGc -3'
miRNA:   3'- aCGCCGCC-GUGCG--CCUGC--AGGUGgCa -5'
11404 3' -62.8 NC_003085.1 + 28596 0.66 0.31728
Target:  5'- gGCGGUGGaCACGcCGGugGUguggcgcUCGCUGc -3'
miRNA:   3'- aCGCCGCC-GUGC-GCCugCA-------GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 29115 0.69 0.207657
Target:  5'- aGCGGCGacGCgGCGCGGAaccaggcgauugaGUCCGCCu- -3'
miRNA:   3'- aCGCCGC--CG-UGCGCCUg------------CAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 29545 0.68 0.254282
Target:  5'- aGUGGCaGGCcagcaaccaggccaACGCGGACGUCUucggcgGCCu- -3'
miRNA:   3'- aCGCCG-CCG--------------UGCGCCUGCAGG------UGGca -5'
11404 3' -62.8 NC_003085.1 + 29788 0.68 0.22626
Target:  5'- -cUGGCGGCAUGCuucuCGUCCACCc- -3'
miRNA:   3'- acGCCGCCGUGCGccu-GCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 31144 0.68 0.249934
Target:  5'- uUGCGGCugcccuucggacGGCcaGCGCcgGGGCGUgCACCGc -3'
miRNA:   3'- -ACGCCG------------CCG--UGCG--CCUGCAgGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 32140 0.7 0.17851
Target:  5'- gGgGGCGGCugGUGGcgcgguggguuacgGCGUCgGCCa- -3'
miRNA:   3'- aCgCCGCCGugCGCC--------------UGCAGgUGGca -5'
11404 3' -62.8 NC_003085.1 + 32188 0.68 0.255535
Target:  5'- aGUGGUGGCGCGCGuGcuucaacGCGcCCugCGc -3'
miRNA:   3'- aCGCCGCCGUGCGC-C-------UGCaGGugGCa -5'
11404 3' -62.8 NC_003085.1 + 32994 0.67 0.26252
Target:  5'- --aGGCGGCGCGCaGGuCGgacaCUGCCGUc -3'
miRNA:   3'- acgCCGCCGUGCG-CCuGCa---GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 33216 0.66 0.318026
Target:  5'- gGCGGCGGCGCaGCacgaGGAUGacgacgCCAgCCGc -3'
miRNA:   3'- aCGCCGCCGUG-CG----CCUGCa-----GGU-GGCa -5'
11404 3' -62.8 NC_003085.1 + 34407 0.66 0.348925
Target:  5'- gGCGGaCGGCAUGgGGAU-UCCGgCCa- -3'
miRNA:   3'- aCGCC-GCCGUGCgCCUGcAGGU-GGca -5'
11404 3' -62.8 NC_003085.1 + 37992 0.67 0.275616
Target:  5'- cUGCGGCGGUG-GUgGGACGcUCaCACCGc -3'
miRNA:   3'- -ACGCCGCCGUgCG-CCUGC-AG-GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 38061 0.7 0.1799
Target:  5'- cGCGGCGGUGCgucagccgGCGGuaGCGcUCCACCc- -3'
miRNA:   3'- aCGCCGCCGUG--------CGCC--UGC-AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 39665 0.69 0.206605
Target:  5'- aGCGGCGcGCGCGUGagcagcagcaGGCGcuggaggcucgucucUCCGCCGUu -3'
miRNA:   3'- aCGCCGC-CGUGCGC----------CUGC---------------AGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 40483 0.67 0.303365
Target:  5'- cUGUcGCuGCugGCGGGCGUCgucgaGCCGg -3'
miRNA:   3'- -ACGcCGcCGugCGCCUGCAGg----UGGCa -5'
11404 3' -62.8 NC_003085.1 + 40773 0.66 0.325554
Target:  5'- gUGUGGCugacGUugGCGGACGgcaCC-CCGg -3'
miRNA:   3'- -ACGCCGc---CGugCGCCUGCa--GGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 40787 0.67 0.26252
Target:  5'- cGCGcacGCGucGCGCGCGGACGggCUgaaACCGUg -3'
miRNA:   3'- aCGC---CGC--CGUGCGCCUGCa-GG---UGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.