miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 13569 0.67 0.26252
Target:  5'- aGCaaGGC-GCGCGUGGACGUgggCACCGg -3'
miRNA:   3'- aCG--CCGcCGUGCGCCUGCAg--GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 13911 0.72 0.11797
Target:  5'- gUGCGGCGuGCGCGCguuucGGACGgggcgCgCGCCGa -3'
miRNA:   3'- -ACGCCGC-CGUGCG-----CCUGCa----G-GUGGCa -5'
11404 3' -62.8 NC_003085.1 + 14372 0.66 0.348925
Target:  5'- aGCGGCuGGCuGCGCGGAUGaggggcagacCCGCUa- -3'
miRNA:   3'- aCGCCG-CCG-UGCGCCUGCa---------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 14905 0.69 0.206605
Target:  5'- gUGCGGC-GCACGCGGGCcggcugguggcgcucGcggCCGCUGUg -3'
miRNA:   3'- -ACGCCGcCGUGCGCCUG---------------Ca--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 15361 0.67 0.269003
Target:  5'- aUGCGGUGGC-C-CuGACG-CCACCGa -3'
miRNA:   3'- -ACGCCGCCGuGcGcCUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 16041 0.66 0.341004
Target:  5'- uUGCGGgcgaGGUAUG-GGACGUgCGCCa- -3'
miRNA:   3'- -ACGCCg---CCGUGCgCCUGCAgGUGGca -5'
11404 3' -62.8 NC_003085.1 + 17225 0.68 0.249934
Target:  5'- cGCuGGUGaGCACGCGG-CG-CC-CCGUg -3'
miRNA:   3'- aCG-CCGC-CGUGCGCCuGCaGGuGGCA- -5'
11404 3' -62.8 NC_003085.1 + 18093 0.67 0.287154
Target:  5'- uUGCGGCcggGGUcgagcuucuugucgGCGCGGGCGggaCgGCCGg -3'
miRNA:   3'- -ACGCCG---CCG--------------UGCGCCUGCa--GgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 18107 0.68 0.249934
Target:  5'- aGCGGCuGCGCaugGCGGccuaccgguACGUCCGCgCGg -3'
miRNA:   3'- aCGCCGcCGUG---CGCC---------UGCAGGUG-GCa -5'
11404 3' -62.8 NC_003085.1 + 19193 0.67 0.282358
Target:  5'- gGCaGGUGGCACGagcaGGACuucaccUUCACCGUc -3'
miRNA:   3'- aCG-CCGCCGUGCg---CCUGc-----AGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 20541 0.69 0.199368
Target:  5'- uUGgGGCGGUugGCcuGCGUCUGCUGg -3'
miRNA:   3'- -ACgCCGCCGugCGccUGCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 21812 0.68 0.22626
Target:  5'- aGuCGGUGGCgAUGCGG-CGUcCCGCUGg -3'
miRNA:   3'- aC-GCCGCCG-UGCGCCuGCA-GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 22064 0.66 0.318026
Target:  5'- cGCGGgcagguaccaCGcGCGCGCGGugucGCGuUCCACCa- -3'
miRNA:   3'- aCGCC----------GC-CGUGCGCC----UGC-AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 23020 0.72 0.121175
Target:  5'- --aGGCGGUACau-GACGUCCACCGUg -3'
miRNA:   3'- acgCCGCCGUGcgcCUGCAGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 24186 0.67 0.296231
Target:  5'- cGCGGUgagguagacgGGCGCGCcgacgacGACGcCCGCCGc -3'
miRNA:   3'- aCGCCG----------CCGUGCGc------CUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 24457 0.67 0.282358
Target:  5'- aGCGGCGccuucuGCAcCGCGGACGUgU-CCGa -3'
miRNA:   3'- aCGCCGC------CGU-GCGCCUGCAgGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 25008 0.67 0.287154
Target:  5'- cUGCGaGCGccagaagggccacaGCGCGCGGuuGaugCCGCCGUa -3'
miRNA:   3'- -ACGC-CGC--------------CGUGCGCCugCa--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 25448 0.7 0.1799
Target:  5'- aGCGGCGGC-CGguuucugGGugGUCgGCCGc -3'
miRNA:   3'- aCGCCGCCGuGCg------CCugCAGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 26707 0.68 0.225693
Target:  5'- cGCGGCgGGCgucgucgGCGCGGGUGUCggaGCCGa -3'
miRNA:   3'- aCGCCG-CCG-------UGCGCCUGCAGg--UGGCa -5'
11404 3' -62.8 NC_003085.1 + 27346 0.66 0.348925
Target:  5'- cUGCuGCGGCGC-CGGGC-UCUGCUGg -3'
miRNA:   3'- -ACGcCGCCGUGcGCCUGcAGGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.