miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 14905 0.69 0.206605
Target:  5'- gUGCGGC-GCACGCGGGCcggcugguggcgcucGcggCCGCUGUg -3'
miRNA:   3'- -ACGCCGcCGUGCGCCUG---------------Ca--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 29115 0.69 0.207657
Target:  5'- aGCGGCGacGCgGCGCGGAaccaggcgauugaGUCCGCCu- -3'
miRNA:   3'- aCGCCGC--CG-UGCGCCUg------------CAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 41561 0.69 0.209775
Target:  5'- cGCGGCGGCAguCGCGGGag-CCAgaGUc -3'
miRNA:   3'- aCGCCGCCGU--GCGCCUgcaGGUggCA- -5'
11404 3' -62.8 NC_003085.1 + 42835 0.69 0.220646
Target:  5'- cGCuGGCGGCGCGCGucuuCGUcuccCCACCu- -3'
miRNA:   3'- aCG-CCGCCGUGCGCcu--GCA----GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 26707 0.68 0.225693
Target:  5'- cGCGGCgGGCgucgucgGCGCGGGUGUCggaGCCGa -3'
miRNA:   3'- aCGCCG-CCG-------UGCGCCUGCAGg--UGGCa -5'
11404 3' -62.8 NC_003085.1 + 21812 0.68 0.22626
Target:  5'- aGuCGGUGGCgAUGCGG-CGUcCCGCUGg -3'
miRNA:   3'- aC-GCCGCCG-UGCGCCuGCA-GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 29788 0.68 0.22626
Target:  5'- -cUGGCGGCAUGCuucuCGUCCACCc- -3'
miRNA:   3'- acGCCGCCGUGCGccu-GCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 5189 0.68 0.237851
Target:  5'- gGCagGGCGGCGcCGUGGguaACGUCUAUCGc -3'
miRNA:   3'- aCG--CCGCCGU-GCGCC---UGCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 4219 0.68 0.237851
Target:  5'- cGCGGCGGguUACGCuGAgCGUCaGCCGg -3'
miRNA:   3'- aCGCCGCC--GUGCGcCU-GCAGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 48527 0.68 0.24383
Target:  5'- gGCGGCGaGgGCGCGGGCcuuccaGUCCuCCu- -3'
miRNA:   3'- aCGCCGC-CgUGCGCCUG------CAGGuGGca -5'
11404 3' -62.8 NC_003085.1 + 11198 0.68 0.24383
Target:  5'- cUGCGGaaggaaGGCACGCcauGACGUgCaACCGUc -3'
miRNA:   3'- -ACGCCg-----CCGUGCGc--CUGCAgG-UGGCA- -5'
11404 3' -62.8 NC_003085.1 + 31144 0.68 0.249934
Target:  5'- uUGCGGCugcccuucggacGGCcaGCGCcgGGGCGUgCACCGc -3'
miRNA:   3'- -ACGCCG------------CCG--UGCG--CCUGCAgGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 17225 0.68 0.249934
Target:  5'- cGCuGGUGaGCACGCGG-CG-CC-CCGUg -3'
miRNA:   3'- aCG-CCGC-CGUGCGCCuGCaGGuGGCA- -5'
11404 3' -62.8 NC_003085.1 + 18107 0.68 0.249934
Target:  5'- aGCGGCuGCGCaugGCGGccuaccgguACGUCCGCgCGg -3'
miRNA:   3'- aCGCCGcCGUG---CGCC---------UGCAGGUG-GCa -5'
11404 3' -62.8 NC_003085.1 + 29545 0.68 0.254282
Target:  5'- aGUGGCaGGCcagcaaccaggccaACGCGGACGUCUucggcgGCCu- -3'
miRNA:   3'- aCGCCG-CCG--------------UGCGCCUGCAGG------UGGca -5'
11404 3' -62.8 NC_003085.1 + 32188 0.68 0.255535
Target:  5'- aGUGGUGGCGCGCGuGcuucaacGCGcCCugCGc -3'
miRNA:   3'- aCGCCGCCGUGCGC-C-------UGCaGGugGCa -5'
11404 3' -62.8 NC_003085.1 + 2644 0.68 0.256164
Target:  5'- -uCGGCGGCGaggugaugcCGCccaaGGACGUggCCACCGUc -3'
miRNA:   3'- acGCCGCCGU---------GCG----CCUGCA--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 28238 0.68 0.256164
Target:  5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3'
miRNA:   3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 49158 0.67 0.261238
Target:  5'- cGCGGgGGCA-GCGGACGgggacucggcggUCACCu- -3'
miRNA:   3'- aCGCCgCCGUgCGCCUGCa-----------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 13569 0.67 0.26252
Target:  5'- aGCaaGGC-GCGCGUGGACGUgggCACCGg -3'
miRNA:   3'- aCG--CCGcCGUGCGCCUGCAg--GUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.