Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11404 | 3' | -62.8 | NC_003085.1 | + | 37992 | 0.67 | 0.275616 |
Target: 5'- cUGCGGCGGUG-GUgGGACGcUCaCACCGc -3' miRNA: 3'- -ACGCCGCCGUgCG-CCUGC-AG-GUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 34407 | 0.66 | 0.348925 |
Target: 5'- gGCGGaCGGCAUGgGGAU-UCCGgCCa- -3' miRNA: 3'- aCGCC-GCCGUGCgCCUGcAGGU-GGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 33216 | 0.66 | 0.318026 |
Target: 5'- gGCGGCGGCGCaGCacgaGGAUGacgacgCCAgCCGc -3' miRNA: 3'- aCGCCGCCGUG-CG----CCUGCa-----GGU-GGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 32994 | 0.67 | 0.26252 |
Target: 5'- --aGGCGGCGCGCaGGuCGgacaCUGCCGUc -3' miRNA: 3'- acgCCGCCGUGCG-CCuGCa---GGUGGCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 32188 | 0.68 | 0.255535 |
Target: 5'- aGUGGUGGCGCGCGuGcuucaacGCGcCCugCGc -3' miRNA: 3'- aCGCCGCCGUGCGC-C-------UGCaGGugGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 32140 | 0.7 | 0.17851 |
Target: 5'- gGgGGCGGCugGUGGcgcgguggguuacgGCGUCgGCCa- -3' miRNA: 3'- aCgCCGCCGugCGCC--------------UGCAGgUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 31144 | 0.68 | 0.249934 |
Target: 5'- uUGCGGCugcccuucggacGGCcaGCGCcgGGGCGUgCACCGc -3' miRNA: 3'- -ACGCCG------------CCG--UGCG--CCUGCAgGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 29788 | 0.68 | 0.22626 |
Target: 5'- -cUGGCGGCAUGCuucuCGUCCACCc- -3' miRNA: 3'- acGCCGCCGUGCGccu-GCAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 29545 | 0.68 | 0.254282 |
Target: 5'- aGUGGCaGGCcagcaaccaggccaACGCGGACGUCUucggcgGCCu- -3' miRNA: 3'- aCGCCG-CCG--------------UGCGCCUGCAGG------UGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 29115 | 0.69 | 0.207657 |
Target: 5'- aGCGGCGacGCgGCGCGGAaccaggcgauugaGUCCGCCu- -3' miRNA: 3'- aCGCCGC--CG-UGCGCCUg------------CAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 28596 | 0.66 | 0.31728 |
Target: 5'- gGCGGUGGaCACGcCGGugGUguggcgcUCGCUGc -3' miRNA: 3'- aCGCCGCC-GUGC-GCCugCA-------GGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 28518 | 0.67 | 0.26252 |
Target: 5'- gGCGGUGGaCGCGUcaGGGCGaaUCCGCgGc -3' miRNA: 3'- aCGCCGCC-GUGCG--CCUGC--AGGUGgCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 28238 | 0.68 | 0.256164 |
Target: 5'- gGUGGCGGCA-GCgguacuugGGACGgcUCCACCu- -3' miRNA: 3'- aCGCCGCCGUgCG--------CCUGC--AGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 28066 | 0.66 | 0.325554 |
Target: 5'- aGCaGGCGGC-CGaUGGugaGUCCGCUGg -3' miRNA: 3'- aCG-CCGCCGuGC-GCCug-CAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 27678 | 0.7 | 0.184603 |
Target: 5'- gGCGGCGacguGCugGUgcugucgcgucuGGGCGUCCGCCc- -3' miRNA: 3'- aCGCCGC----CGugCG------------CCUGCAGGUGGca -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 27346 | 0.66 | 0.348925 |
Target: 5'- cUGCuGCGGCGC-CGGGC-UCUGCUGg -3' miRNA: 3'- -ACGcCGCCGUGcGCCUGcAGGUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 26707 | 0.68 | 0.225693 |
Target: 5'- cGCGGCgGGCgucgucgGCGCGGGUGUCggaGCCGa -3' miRNA: 3'- aCGCCG-CCG-------UGCGCCUGCAGg--UGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 25448 | 0.7 | 0.1799 |
Target: 5'- aGCGGCGGC-CGguuucugGGugGUCgGCCGc -3' miRNA: 3'- aCGCCGCCGuGCg------CCugCAGgUGGCa -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 25008 | 0.67 | 0.287154 |
Target: 5'- cUGCGaGCGccagaagggccacaGCGCGCGGuuGaugCCGCCGUa -3' miRNA: 3'- -ACGC-CGC--------------CGUGCGCCugCa--GGUGGCA- -5' |
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11404 | 3' | -62.8 | NC_003085.1 | + | 24457 | 0.67 | 0.282358 |
Target: 5'- aGCGGCGccuucuGCAcCGCGGACGUgU-CCGa -3' miRNA: 3'- aCGCCGC------CGU-GCGCCUGCAgGuGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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