miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 49158 0.67 0.261238
Target:  5'- cGCGGgGGCA-GCGGACGgggacucggcggUCACCu- -3'
miRNA:   3'- aCGCCgCCGUgCGCCUGCa-----------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 48743 0.66 0.348925
Target:  5'- cGUGaGCGGCGCGuCaGGCG-CCACgCGg -3'
miRNA:   3'- aCGC-CGCCGUGC-GcCUGCaGGUG-GCa -5'
11404 3' -62.8 NC_003085.1 + 48653 1.07 0.000261
Target:  5'- cUGCGGCGGCACGCGGACGUCCACCGUg -3'
miRNA:   3'- -ACGCCGCCGUGCGCCUGCAGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 48565 0.71 0.162136
Target:  5'- aGCGGguUGGCACGggaugccccuCGGACG-CCACCGc -3'
miRNA:   3'- aCGCC--GCCGUGC----------GCCUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 48527 0.68 0.24383
Target:  5'- gGCGGCGaGgGCGCGGGCcuuccaGUCCuCCu- -3'
miRNA:   3'- aCGCCGC-CgUGCGCCUG------CAGGuGGca -5'
11404 3' -62.8 NC_003085.1 + 48516 0.69 0.204514
Target:  5'- aGCGGCcugucuGGCACcCGGACG-CgGCCGa -3'
miRNA:   3'- aCGCCG------CCGUGcGCCUGCaGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 48186 0.67 0.296231
Target:  5'- -uCGGCGcGCACGaGGugGcCCACCu- -3'
miRNA:   3'- acGCCGC-CGUGCgCCugCaGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 47379 0.7 0.189414
Target:  5'- gUGCGGCGGCuGCGCucgucGCGUC-ACCGUc -3'
miRNA:   3'- -ACGCCGCCG-UGCGcc---UGCAGgUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 45359 0.71 0.138079
Target:  5'- cGCGGCgcccaacuccagcGGCGagUGCGGGCGcUCCACCa- -3'
miRNA:   3'- aCGCCG-------------CCGU--GCGCCUGC-AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 43210 0.67 0.296231
Target:  5'- -aCGGCGGCGuCGUGuaGGCGUCgACCa- -3'
miRNA:   3'- acGCCGCCGU-GCGC--CUGCAGgUGGca -5'
11404 3' -62.8 NC_003085.1 + 42835 0.69 0.220646
Target:  5'- cGCuGGCGGCGCGCGucuuCGUcuccCCACCu- -3'
miRNA:   3'- aCG-CCGCCGUGCGCcu--GCA----GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 42714 0.72 0.134105
Target:  5'- aGCGGCGGCaccucagGCGUGGGCGUCggggcgaugcgggCGCgGUg -3'
miRNA:   3'- aCGCCGCCG-------UGCGCCUGCAG-------------GUGgCA- -5'
11404 3' -62.8 NC_003085.1 + 42381 0.67 0.296231
Target:  5'- -uCGGCGGCaugaGCGCGGGCcuuGUCCuCCu- -3'
miRNA:   3'- acGCCGCCG----UGCGCCUG---CAGGuGGca -5'
11404 3' -62.8 NC_003085.1 + 41561 0.69 0.209775
Target:  5'- cGCGGCGGCAguCGCGGGag-CCAgaGUc -3'
miRNA:   3'- aCGCCGCCGU--GCGCCUgcaGGUggCA- -5'
11404 3' -62.8 NC_003085.1 + 40988 0.66 0.310629
Target:  5'- aGCGGCaagGGCugGCccagcGGCGUCgucauCGCCGUg -3'
miRNA:   3'- aCGCCG---CCGugCGc----CUGCAG-----GUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 40787 0.67 0.26252
Target:  5'- cGCGcacGCGucGCGCGCGGACGggCUgaaACCGUg -3'
miRNA:   3'- aCGC---CGC--CGUGCGCCUGCa-GG---UGGCA- -5'
11404 3' -62.8 NC_003085.1 + 40773 0.66 0.325554
Target:  5'- gUGUGGCugacGUugGCGGACGgcaCC-CCGg -3'
miRNA:   3'- -ACGCCGc---CGugCGCCUGCa--GGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 40483 0.67 0.303365
Target:  5'- cUGUcGCuGCugGCGGGCGUCgucgaGCCGg -3'
miRNA:   3'- -ACGcCGcCGugCGCCUGCAGg----UGGCa -5'
11404 3' -62.8 NC_003085.1 + 39665 0.69 0.206605
Target:  5'- aGCGGCGcGCGCGUGagcagcagcaGGCGcuggaggcucgucucUCCGCCGUu -3'
miRNA:   3'- aCGCCGC-CGUGCGC----------CUGC---------------AGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 38061 0.7 0.1799
Target:  5'- cGCGGCGGUGCgucagccgGCGGuaGCGcUCCACCc- -3'
miRNA:   3'- aCGCCGCCGUG--------CGCC--UGC-AGGUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.