miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 41002 0.67 0.527807
Target:  5'- gCC-CAGCGGCGucgucaucGCCGUggGCGucGCUGg -3'
miRNA:   3'- -GGuGUCGUCGUc-------CGGCGuuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 103 0.67 0.527807
Target:  5'- -gACGGCGGaCGGGCgGCGGGCccccaAugUGg -3'
miRNA:   3'- ggUGUCGUC-GUCCGgCGUUCG-----UugAC- -5'
11404 5' -55.9 NC_003085.1 + 30809 0.67 0.517058
Target:  5'- gCGCcGCAGCAaucaCCGCGGGCGACa- -3'
miRNA:   3'- gGUGuCGUCGUcc--GGCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 18083 0.67 0.517058
Target:  5'- -aGCGGCAGUgggaguuGGCCuGgAAGCGGCUGc -3'
miRNA:   3'- ggUGUCGUCGu------CCGG-CgUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 47139 0.67 0.517058
Target:  5'- aCCGaugaAGCGGC-GGCCGguGGCGAg-- -3'
miRNA:   3'- -GGUg---UCGUCGuCCGGCguUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 30660 0.68 0.507459
Target:  5'- gUCGCuGCGGCAGGgCGCucugcgccucgcauuGGCuGCUGa -3'
miRNA:   3'- -GGUGuCGUCGUCCgGCGu--------------UCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 26269 0.68 0.506398
Target:  5'- cCUGCAGCAGCAauGGacguuugccaCGCAGGUcgGGCUGg -3'
miRNA:   3'- -GGUGUCGUCGU--CCg---------GCGUUCG--UUGAC- -5'
11404 5' -55.9 NC_003085.1 + 8516 0.68 0.506398
Target:  5'- gCGCAcCAGCGGG-CGCAGGCGAa-- -3'
miRNA:   3'- gGUGUcGUCGUCCgGCGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 41559 0.68 0.506398
Target:  5'- gCCGCGGCGGCA-GUCGCGGG-AGCc- -3'
miRNA:   3'- -GGUGUCGUCGUcCGGCGUUCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 288 0.68 0.495832
Target:  5'- -aGCGGCGGCAGGaCCG--GGCGGCc- -3'
miRNA:   3'- ggUGUCGUCGUCC-GGCguUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 38028 0.68 0.485368
Target:  5'- cCCACuccuuGCA-CGGGCCGUAgaAGCAGCc- -3'
miRNA:   3'- -GGUGu----CGUcGUCCGGCGU--UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 10410 0.68 0.485368
Target:  5'- gCCuucCAGCAGCAGGUaCGC--GCAGCg- -3'
miRNA:   3'- -GGu--GUCGUCGUCCG-GCGuuCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39337 0.68 0.464763
Target:  5'- uUCGCGGUAGUccGCUGCGAGCAGg-- -3'
miRNA:   3'- -GGUGUCGUCGucCGGCGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 6412 0.69 0.454632
Target:  5'- aCGCAGCcguuccccAGCGGGCCGCu--CGACa- -3'
miRNA:   3'- gGUGUCG--------UCGUCCGGCGuucGUUGac -5'
11404 5' -55.9 NC_003085.1 + 22131 0.69 0.448612
Target:  5'- gCCGCAGCAgccggacccaaagguGguGGCC-CAGGCGAUg- -3'
miRNA:   3'- -GGUGUCGU---------------CguCCGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 20046 0.69 0.433757
Target:  5'- gCCugAGCcuccgccaugGGCuGGCCGCGcuggcgcAGCAACUc -3'
miRNA:   3'- -GGugUCG----------UCGuCCGGCGU-------UCGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 37054 0.69 0.415357
Target:  5'- gCGCAGCGGCcccGCCGgguCGAGCAGCa- -3'
miRNA:   3'- gGUGUCGUCGuc-CGGC---GUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 24879 0.69 0.405867
Target:  5'- cCUGCAGCGGCgcccaguuccaGGGCCGCcucaucgccGAGUAACa- -3'
miRNA:   3'- -GGUGUCGUCG-----------UCCGGCG---------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39268 0.69 0.405867
Target:  5'- cCCGCGGgugAGCAGGUCGCGcauuGCAGCc- -3'
miRNA:   3'- -GGUGUCg--UCGUCCGGCGUu---CGUUGac -5'
11404 5' -55.9 NC_003085.1 + 21109 0.7 0.396515
Target:  5'- gCCACGGCGGU--GCCGCGgauGGCGAUa- -3'
miRNA:   3'- -GGUGUCGUCGucCGGCGU---UCGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.