miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 39659 0.66 0.582636
Target:  5'- aCACcgAGCGGCGcGCgCGUGAGCAGCa- -3'
miRNA:   3'- gGUG--UCGUCGUcCG-GCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 32118 0.67 0.571552
Target:  5'- aCACGGCAcucGguGGUgcgaCGgGGGCGGCUGg -3'
miRNA:   3'- gGUGUCGU---CguCCG----GCgUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 31639 0.67 0.571552
Target:  5'- gCCcCAGgGGCcuGCCGCAcaGGCGGCa- -3'
miRNA:   3'- -GGuGUCgUCGucCGGCGU--UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 23077 0.67 0.571552
Target:  5'- cCCugGGCgcucAGC-GGCC-CGAGCAACg- -3'
miRNA:   3'- -GGugUCG----UCGuCCGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 21857 0.67 0.571552
Target:  5'- uCCACAcaccGC-GCAGGCCGaagguGGCcgAACUGg -3'
miRNA:   3'- -GGUGU----CGuCGUCCGGCgu---UCG--UUGAC- -5'
11404 5' -55.9 NC_003085.1 + 39897 0.67 0.568236
Target:  5'- uCgGCGGCGGCAGGCCaaacGCcgcucuuugggaugGGGUcGCUGg -3'
miRNA:   3'- -GgUGUCGUCGUCCGG----CG--------------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 32809 0.67 0.560518
Target:  5'- gCCAgugaAGCAGC-GGCUGUc-GCGACUGa -3'
miRNA:   3'- -GGUg---UCGUCGuCCGGCGuuCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 13634 0.67 0.560518
Target:  5'- aCugAGUcGCAGGCgcucgGCGAGCAGgUGg -3'
miRNA:   3'- gGugUCGuCGUCCGg----CGUUCGUUgAC- -5'
11404 5' -55.9 NC_003085.1 + 9046 0.67 0.560518
Target:  5'- aCCGCGGCuGCacGGGCgGCAGGUg---- -3'
miRNA:   3'- -GGUGUCGuCG--UCCGgCGUUCGuugac -5'
11404 5' -55.9 NC_003085.1 + 18354 0.67 0.560518
Target:  5'- aCGgGGCGguGCAGGCCGUGgAGUcGCUGu -3'
miRNA:   3'- gGUgUCGU--CGUCCGGCGU-UCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 192 0.67 0.560518
Target:  5'- gCCACAGgGGguGGCCaugacGCAGGaagaGACg- -3'
miRNA:   3'- -GGUGUCgUCguCCGG-----CGUUCg---UUGac -5'
11404 5' -55.9 NC_003085.1 + 3711 0.67 0.560518
Target:  5'- uCCGguGCuGguGGUgacgaCGCAGGCAGCa- -3'
miRNA:   3'- -GGUguCGuCguCCG-----GCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39236 0.67 0.560518
Target:  5'- gCUACGGCGuacaacGCacucuGGGCCGCA-GCAugUGc -3'
miRNA:   3'- -GGUGUCGU------CG-----UCCGGCGUuCGUugAC- -5'
11404 5' -55.9 NC_003085.1 + 5267 0.67 0.549545
Target:  5'- gCGC-GCGGCAGuaCGCGAGCAcggGCg- -3'
miRNA:   3'- gGUGuCGUCGUCcgGCGUUCGU---UGac -5'
11404 5' -55.9 NC_003085.1 + 10186 0.67 0.548451
Target:  5'- aCCGCAGCgccguagAGgAGGCgCGC-AGCAcauGCUGc -3'
miRNA:   3'- -GGUGUCG-------UCgUCCG-GCGuUCGU---UGAC- -5'
11404 5' -55.9 NC_003085.1 + 49128 0.67 0.548451
Target:  5'- gCCGCccuucuuGGCGGCGGGCuucuucuuCGCGggGGCAGCg- -3'
miRNA:   3'- -GGUG-------UCGUCGUCCG--------GCGU--UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 46914 0.67 0.538639
Target:  5'- gUCACcGCGGCAGGCgGCAcaGGUucGGCg- -3'
miRNA:   3'- -GGUGuCGUCGUCCGgCGU--UCG--UUGac -5'
11404 5' -55.9 NC_003085.1 + 41002 0.67 0.527807
Target:  5'- gCC-CAGCGGCGucgucaucGCCGUggGCGucGCUGg -3'
miRNA:   3'- -GGuGUCGUCGUc-------CGGCGuuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 29412 0.67 0.527807
Target:  5'- cCCGCucCAGgAGGgCGCGGGCGGCg- -3'
miRNA:   3'- -GGUGucGUCgUCCgGCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 48844 0.67 0.527807
Target:  5'- gCGCAGCAcaacccgccGUAGGCCGCGAcgGGCUu -3'
miRNA:   3'- gGUGUCGU---------CGUCCGGCGUUcgUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.