miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 12238 0.76 0.15096
Target:  5'- gCGCGGCGGCuGGGCCGCcagaauugaAGGCcGCUGg -3'
miRNA:   3'- gGUGUCGUCG-UCCGGCG---------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 13634 0.67 0.560518
Target:  5'- aCugAGUcGCAGGCgcucgGCGAGCAGgUGg -3'
miRNA:   3'- gGugUCGuCGUCCGg----CGUUCGUUgAC- -5'
11404 5' -55.9 NC_003085.1 + 13872 0.71 0.35189
Target:  5'- cCCGCGccCGGCAaGCCGCAAGCucuACUGc -3'
miRNA:   3'- -GGUGUc-GUCGUcCGGCGUUCGu--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 16996 0.66 0.638513
Target:  5'- gCCucggcCAGUAGCucauccaugAGGCCGCGGGCGu--- -3'
miRNA:   3'- -GGu----GUCGUCG---------UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 17822 0.71 0.326875
Target:  5'- gCCGCcuguGCGGCAGGCCcCuggGGCAguGCUGg -3'
miRNA:   3'- -GGUGu---CGUCGUCCGGcGu--UCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 17976 0.76 0.159642
Target:  5'- cCgGCAGC-GCGGGCCGCAGGgCAcggaGCUGc -3'
miRNA:   3'- -GgUGUCGuCGUCCGGCGUUC-GU----UGAC- -5'
11404 5' -55.9 NC_003085.1 + 18083 0.67 0.517058
Target:  5'- -aGCGGCAGUgggaguuGGCCuGgAAGCGGCUGc -3'
miRNA:   3'- ggUGUCGUCGu------CCGG-CgUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 18354 0.67 0.560518
Target:  5'- aCGgGGCGguGCAGGCCGUGgAGUcGCUGu -3'
miRNA:   3'- gGUgUCGU--CGUCCGGCGU-UCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 18762 0.66 0.638513
Target:  5'- gCCGCuGgAGCGGGCgauggacaaaGCGaaGGCGGCUGu -3'
miRNA:   3'- -GGUGuCgUCGUCCGg---------CGU--UCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 20046 0.69 0.433757
Target:  5'- gCCugAGCcuccgccaugGGCuGGCCGCGcuggcgcAGCAACUc -3'
miRNA:   3'- -GGugUCG----------UCGuCCGGCGU-------UCGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 21109 0.7 0.396515
Target:  5'- gCCACGGCGGU--GCCGCGgauGGCGAUa- -3'
miRNA:   3'- -GGUGUCGUCGucCGGCGU---UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 21328 0.76 0.16415
Target:  5'- -gAgAGCAGCGucGGCCGC-AGCAACUGc -3'
miRNA:   3'- ggUgUCGUCGU--CCGGCGuUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 21857 0.67 0.571552
Target:  5'- uCCACAcaccGC-GCAGGCCGaagguGGCcgAACUGg -3'
miRNA:   3'- -GGUGU----CGuCGUCCGGCgu---UCG--UUGAC- -5'
11404 5' -55.9 NC_003085.1 + 22099 0.71 0.310944
Target:  5'- gCGCAGaAGCAGGCCGCccAGCAGa-- -3'
miRNA:   3'- gGUGUCgUCGUCCGGCGu-UCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 22131 0.69 0.448612
Target:  5'- gCCGCAGCAgccggacccaaagguGguGGCC-CAGGCGAUg- -3'
miRNA:   3'- -GGUGUCGU---------------CguCCGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 22175 0.66 0.631791
Target:  5'- -gACAGCAggaaauggcgaagguGCAGGCCGaggugcaGGGCGACc- -3'
miRNA:   3'- ggUGUCGU---------------CGUCCGGCg------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 22262 0.72 0.295611
Target:  5'- -aGCGGCAGCAGGCCGaguGgAACg- -3'
miRNA:   3'- ggUGUCGUCGUCCGGCguuCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 22787 0.74 0.221717
Target:  5'- aCgGCAGCGGCAacGGCCGCucccgcccaggAGGCGACg- -3'
miRNA:   3'- -GgUGUCGUCGU--CCGGCG-----------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 23077 0.67 0.571552
Target:  5'- cCCugGGCgcucAGC-GGCC-CGAGCAACg- -3'
miRNA:   3'- -GGugUCG----UCGuCCGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 23645 0.73 0.24016
Target:  5'- -aGCAGCgcgAGCAGGCCGCGcaGGCGAa-- -3'
miRNA:   3'- ggUGUCG---UCGUCCGGCGU--UCGUUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.