miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 103 0.67 0.527807
Target:  5'- -gACGGCGGaCGGGCgGCGGGCccccaAugUGg -3'
miRNA:   3'- ggUGUCGUC-GUCCGgCGUUCG-----UugAC- -5'
11404 5' -55.9 NC_003085.1 + 192 0.67 0.560518
Target:  5'- gCCACAGgGGguGGCCaugacGCAGGaagaGACg- -3'
miRNA:   3'- -GGUGUCgUCguCCGG-----CGUUCg---UUGac -5'
11404 5' -55.9 NC_003085.1 + 288 0.68 0.495832
Target:  5'- -aGCGGCGGCAGGaCCG--GGCGGCc- -3'
miRNA:   3'- ggUGUCGUCGUCC-GGCguUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 570 0.71 0.343403
Target:  5'- gCGCGGCuGGCGGGCCaaugcuccguguGCG-GCGACUGc -3'
miRNA:   3'- gGUGUCG-UCGUCCGG------------CGUuCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 1580 0.75 0.193666
Target:  5'- gCCAgAG-AGCAGGCCGCAcGC-GCUGa -3'
miRNA:   3'- -GGUgUCgUCGUCCGGCGUuCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 2783 0.71 0.326875
Target:  5'- -gGCAGCGGCGGcGCUcCAGGCGGCg- -3'
miRNA:   3'- ggUGUCGUCGUC-CGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 3082 0.66 0.638513
Target:  5'- gCACAGCGugacgagccGCAGGCCGacGGCGGaUGa -3'
miRNA:   3'- gGUGUCGU---------CGUCCGGCguUCGUUgAC- -5'
11404 5' -55.9 NC_003085.1 + 3555 0.71 0.310944
Target:  5'- aCCACgcucaaGGCGGcCGGGCgGCAAGCGcgccucGCUGc -3'
miRNA:   3'- -GGUG------UCGUC-GUCCGgCGUUCGU------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 3711 0.67 0.560518
Target:  5'- uCCGguGCuGguGGUgacgaCGCAGGCAGCa- -3'
miRNA:   3'- -GGUguCGuCguCCG-----GCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 5267 0.67 0.549545
Target:  5'- gCGC-GCGGCAGuaCGCGAGCAcggGCg- -3'
miRNA:   3'- gGUGuCGUCGUCcgGCGUUCGU---UGac -5'
11404 5' -55.9 NC_003085.1 + 6412 0.69 0.454632
Target:  5'- aCGCAGCcguuccccAGCGGGCCGCu--CGACa- -3'
miRNA:   3'- gGUGUCG--------UCGUCCGGCGuucGUUGac -5'
11404 5' -55.9 NC_003085.1 + 7956 0.71 0.326875
Target:  5'- gCC-CGGUAGCcgaugaagucGGGCCGguAGCAgcGCUGg -3'
miRNA:   3'- -GGuGUCGUCG----------UCCGGCguUCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 8516 0.68 0.506398
Target:  5'- gCGCAcCAGCGGG-CGCAGGCGAa-- -3'
miRNA:   3'- gGUGUcGUCGUCCgGCGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 8654 0.66 0.582636
Target:  5'- aCCGcCAGCAGCAcGGuuucagcccguCCGCGcGCGACg- -3'
miRNA:   3'- -GGU-GUCGUCGU-CC-----------GGCGUuCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 8847 0.67 0.527807
Target:  5'- -gACGGCAGC-GGCCGUcAGCAc--- -3'
miRNA:   3'- ggUGUCGUCGuCCGGCGuUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 9046 0.67 0.560518
Target:  5'- aCCGCGGCuGCacGGGCgGCAGGUg---- -3'
miRNA:   3'- -GGUGUCGuCG--UCCGgCGUUCGuugac -5'
11404 5' -55.9 NC_003085.1 + 9089 0.71 0.343403
Target:  5'- gCCAgaGGCGuCAGcGCCGCGGGCAGCa- -3'
miRNA:   3'- -GGUg-UCGUcGUC-CGGCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 10186 0.67 0.548451
Target:  5'- aCCGCAGCgccguagAGgAGGCgCGC-AGCAcauGCUGc -3'
miRNA:   3'- -GGUGUCG-------UCgUCCG-GCGuUCGU---UGAC- -5'
11404 5' -55.9 NC_003085.1 + 10410 0.68 0.485368
Target:  5'- gCCuucCAGCAGCAGGUaCGC--GCAGCg- -3'
miRNA:   3'- -GGu--GUCGUCGUCCG-GCGuuCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 11589 0.66 0.626189
Target:  5'- cCCAcCAGCaccuccgacgucuGGCcGGCCagcGCAGGCAGCg- -3'
miRNA:   3'- -GGU-GUCG-------------UCGuCCGG---CGUUCGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.