miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 48688 1.09 0.000603
Target:  5'- gCCACAGCAGCAGGCCGCAAGCAACUGc -3'
miRNA:   3'- -GGUGUCGUCGUCCGGCGUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 43591 0.81 0.069384
Target:  5'- gCCACGGCAG-AGGUCGCAGGC-GCUGc -3'
miRNA:   3'- -GGUGUCGUCgUCCGGCGUUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 35302 0.8 0.078013
Target:  5'- gCuCGGCAGCAGGUCGCG-GCGGCUGu -3'
miRNA:   3'- gGuGUCGUCGUCCGGCGUuCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 29180 0.77 0.127434
Target:  5'- cCCGCAGUGGCAGcGCCGCGAG-GACg- -3'
miRNA:   3'- -GGUGUCGUCGUC-CGGCGUUCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 23686 0.77 0.131105
Target:  5'- uCCAC-GCAGCGGGcCCGCGcAGCAGCc- -3'
miRNA:   3'- -GGUGuCGUCGUCC-GGCGU-UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 41043 0.76 0.146782
Target:  5'- uCCugGGCggcuuGGCGGGCUGCuacGCGACUGg -3'
miRNA:   3'- -GGugUCG-----UCGUCCGGCGuu-CGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 12238 0.76 0.15096
Target:  5'- gCGCGGCGGCuGGGCCGCcagaauugaAGGCcGCUGg -3'
miRNA:   3'- gGUGUCGUCG-UCCGGCG---------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 17976 0.76 0.159642
Target:  5'- cCgGCAGC-GCGGGCCGCAGGgCAcggaGCUGc -3'
miRNA:   3'- -GgUGUCGuCGUCCGGCGUUC-GU----UGAC- -5'
11404 5' -55.9 NC_003085.1 + 21328 0.76 0.16415
Target:  5'- -gAgAGCAGCGucGGCCGC-AGCAACUGc -3'
miRNA:   3'- ggUgUCGUCGU--CCGGCGuUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 38761 0.76 0.168772
Target:  5'- gCCAguGCcucGCGGGCCGCGcGCAggGCUGg -3'
miRNA:   3'- -GGUguCGu--CGUCCGGCGUuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 32786 0.75 0.188443
Target:  5'- cCUGCGuGUAGCAGGUCGaCAGGCAGCg- -3'
miRNA:   3'- -GGUGU-CGUCGUCCGGC-GUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 1580 0.75 0.193666
Target:  5'- gCCAgAG-AGCAGGCCGCAcGC-GCUGa -3'
miRNA:   3'- -GGUgUCgUCGUCCGGCGUuCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 39617 0.74 0.203941
Target:  5'- gCACcgAGCAGguGGCCGCAGgaguggcGCAACUu -3'
miRNA:   3'- gGUG--UCGUCguCCGGCGUU-------CGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 35726 0.74 0.209536
Target:  5'- gCCACGGCgagGGCAGGguggccgauguccUCGCuGAGCAACUGg -3'
miRNA:   3'- -GGUGUCG---UCGUCC-------------GGCG-UUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 48388 0.74 0.221717
Target:  5'- gCGCGGCgAGCAGcGCCGCAuugucugccucGGCGgcGCUGg -3'
miRNA:   3'- gGUGUCG-UCGUC-CGGCGU-----------UCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 22787 0.74 0.221717
Target:  5'- aCgGCAGCGGCAacGGCCGCucccgcccaggAGGCGACg- -3'
miRNA:   3'- -GgUGUCGUCGU--CCGGCG-----------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 23645 0.73 0.24016
Target:  5'- -aGCAGCgcgAGCAGGCCGCGcaGGCGAa-- -3'
miRNA:   3'- ggUGUCG---UCGUCCGGCGU--UCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 26364 0.73 0.244644
Target:  5'- aCCGCAcGCAGCggaugccguugcucGGGCCGCuGAGCGcccaggGCUGg -3'
miRNA:   3'- -GGUGU-CGUCG--------------UCCGGCG-UUCGU------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 35194 0.73 0.25117
Target:  5'- aCgGCAGCAGCcuGGCCGCAcgucucgcugcaguAGgGGCUGu -3'
miRNA:   3'- -GgUGUCGUCGu-CCGGCGU--------------UCgUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 43358 0.72 0.273724
Target:  5'- uUCGCGGCGucGUAGGCgGCAAGCAGg-- -3'
miRNA:   3'- -GGUGUCGU--CGUCCGgCGUUCGUUgac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.