miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 41254 0.7 0.387303
Target:  5'- gCCACGcGCGGCAGGCUggacugGCGGGCcauGCa- -3'
miRNA:   3'- -GGUGU-CGUCGUCCGG------CGUUCGu--UGac -5'
11404 5' -55.9 NC_003085.1 + 43358 0.72 0.273724
Target:  5'- uUCGCGGCGucGUAGGCgGCAAGCAGg-- -3'
miRNA:   3'- -GGUGUCGU--CGUCCGgCGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 48438 0.72 0.280872
Target:  5'- gCAUGGaCGGCgAGGCCGCGAGCAu--- -3'
miRNA:   3'- gGUGUC-GUCG-UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 22262 0.72 0.295611
Target:  5'- -aGCGGCAGCAGGCCGaguGgAACg- -3'
miRNA:   3'- ggUGUCGUCGUCCGGCguuCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 3555 0.71 0.310944
Target:  5'- aCCACgcucaaGGCGGcCGGGCgGCAAGCGcgccucGCUGc -3'
miRNA:   3'- -GGUG------UCGUC-GUCCGgCGUUCGU------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 22099 0.71 0.310944
Target:  5'- gCGCAGaAGCAGGCCGCccAGCAGa-- -3'
miRNA:   3'- gGUGUCgUCGUCCGGCGu-UCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 17822 0.71 0.326875
Target:  5'- gCCGCcuguGCGGCAGGCCcCuggGGCAguGCUGg -3'
miRNA:   3'- -GGUGu---CGUCGUCCGGcGu--UCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 30051 0.71 0.35189
Target:  5'- gCACAaguuGCAGCAGGCC-CAGGcCGGCa- -3'
miRNA:   3'- gGUGU----CGUCGUCCGGcGUUC-GUUGac -5'
11404 5' -55.9 NC_003085.1 + 13872 0.71 0.35189
Target:  5'- cCCGCGccCGGCAaGCCGCAAGCucuACUGc -3'
miRNA:   3'- -GGUGUc-GUCGUcCGGCGUUCGu--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 26364 0.73 0.244644
Target:  5'- aCCGCAcGCAGCggaugccguugcucGGGCCGCuGAGCGcccaggGCUGg -3'
miRNA:   3'- -GGUGU-CGUCG--------------UCCGGCG-UUCGU------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 23645 0.73 0.24016
Target:  5'- -aGCAGCgcgAGCAGGCCGCGcaGGCGAa-- -3'
miRNA:   3'- ggUGUCG---UCGUCCGGCGU--UCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 48388 0.74 0.221717
Target:  5'- gCGCGGCgAGCAGcGCCGCAuugucugccucGGCGgcGCUGg -3'
miRNA:   3'- gGUGUCG-UCGUC-CGGCGU-----------UCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 35302 0.8 0.078013
Target:  5'- gCuCGGCAGCAGGUCGCG-GCGGCUGu -3'
miRNA:   3'- gGuGUCGUCGUCCGGCGUuCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 29180 0.77 0.127434
Target:  5'- cCCGCAGUGGCAGcGCCGCGAG-GACg- -3'
miRNA:   3'- -GGUGUCGUCGUC-CGGCGUUCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 23686 0.77 0.131105
Target:  5'- uCCAC-GCAGCGGGcCCGCGcAGCAGCc- -3'
miRNA:   3'- -GGUGuCGUCGUCC-GGCGU-UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 41043 0.76 0.146782
Target:  5'- uCCugGGCggcuuGGCGGGCUGCuacGCGACUGg -3'
miRNA:   3'- -GGugUCG-----UCGUCCGGCGuu-CGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 17976 0.76 0.159642
Target:  5'- cCgGCAGC-GCGGGCCGCAGGgCAcggaGCUGc -3'
miRNA:   3'- -GgUGUCGuCGUCCGGCGUUC-GU----UGAC- -5'
11404 5' -55.9 NC_003085.1 + 39617 0.74 0.203941
Target:  5'- gCACcgAGCAGguGGCCGCAGgaguggcGCAACUu -3'
miRNA:   3'- gGUG--UCGUCguCCGGCGUU-------CGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 35726 0.74 0.209536
Target:  5'- gCCACGGCgagGGCAGGguggccgauguccUCGCuGAGCAACUGg -3'
miRNA:   3'- -GGUGUCG---UCGUCC-------------GGCG-UUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 22787 0.74 0.221717
Target:  5'- aCgGCAGCGGCAacGGCCGCucccgcccaggAGGCGACg- -3'
miRNA:   3'- -GgUGUCGUCGU--CCGGCG-----------UUCGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.