miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 16996 0.66 0.638513
Target:  5'- gCCucggcCAGUAGCucauccaugAGGCCGCGGGCGu--- -3'
miRNA:   3'- -GGu----GUCGUCG---------UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 29412 0.67 0.527807
Target:  5'- cCCGCucCAGgAGGgCGCGGGCGGCg- -3'
miRNA:   3'- -GGUGucGUCgUCCgGCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 103 0.67 0.527807
Target:  5'- -gACGGCGGaCGGGCgGCGGGCccccaAugUGg -3'
miRNA:   3'- ggUGUCGUC-GUCCGgCGUUCG-----UugAC- -5'
11404 5' -55.9 NC_003085.1 + 48688 1.09 0.000603
Target:  5'- gCCACAGCAGCAGGCCGCAAGCAACUGc -3'
miRNA:   3'- -GGUGUCGUCGUCCGGCGUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 25803 0.66 0.616109
Target:  5'- gCCugGGCGGCGuucgccugcgcGGCCuGCucGCGcuGCUGa -3'
miRNA:   3'- -GGugUCGUCGU-----------CCGG-CGuuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 37441 0.66 0.61499
Target:  5'- gCGCAGCaccGGCAGGUgCGCcAGCGucaggccGCUGc -3'
miRNA:   3'- gGUGUCG---UCGUCCG-GCGuUCGU-------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 40327 0.66 0.604924
Target:  5'- uCCGcCAGguGCcgcucccagagAGGUCGCGacAGCAACUc -3'
miRNA:   3'- -GGU-GUCguCG-----------UCCGGCGU--UCGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 25740 0.66 0.582636
Target:  5'- gCCACGGUgggGGCcgGGGCCGUcuugacggaggAGGCuGCUGc -3'
miRNA:   3'- -GGUGUCG---UCG--UCCGGCG-----------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 31639 0.67 0.571552
Target:  5'- gCCcCAGgGGCcuGCCGCAcaGGCGGCa- -3'
miRNA:   3'- -GGuGUCgUCGucCGGCGU--UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 10186 0.67 0.548451
Target:  5'- aCCGCAGCgccguagAGgAGGCgCGC-AGCAcauGCUGc -3'
miRNA:   3'- -GGUGUCG-------UCgUCCG-GCGuUCGU---UGAC- -5'
11404 5' -55.9 NC_003085.1 + 3711 0.67 0.560518
Target:  5'- uCCGguGCuGguGGUgacgaCGCAGGCAGCa- -3'
miRNA:   3'- -GGUguCGuCguCCG-----GCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 21857 0.67 0.571552
Target:  5'- uCCACAcaccGC-GCAGGCCGaagguGGCcgAACUGg -3'
miRNA:   3'- -GGUGU----CGuCGUCCGGCgu---UCG--UUGAC- -5'
11404 5' -55.9 NC_003085.1 + 3082 0.66 0.638513
Target:  5'- gCACAGCGugacgagccGCAGGCCGacGGCGGaUGa -3'
miRNA:   3'- gGUGUCGU---------CGUCCGGCguUCGUUgAC- -5'
11404 5' -55.9 NC_003085.1 + 192 0.67 0.560518
Target:  5'- gCCACAGgGGguGGCCaugacGCAGGaagaGACg- -3'
miRNA:   3'- -GGUGUCgUCguCCGG-----CGUUCg---UUGac -5'
11404 5' -55.9 NC_003085.1 + 29597 0.66 0.627309
Target:  5'- gCC-CAGCcguccAGCAGGCCGaaguaguGCGACa- -3'
miRNA:   3'- -GGuGUCG-----UCGUCCGGCguu----CGUUGac -5'
11404 5' -55.9 NC_003085.1 + 23077 0.67 0.571552
Target:  5'- cCCugGGCgcucAGC-GGCC-CGAGCAACg- -3'
miRNA:   3'- -GGugUCG----UCGuCCGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 49128 0.67 0.548451
Target:  5'- gCCGCccuucuuGGCGGCGGGCuucuucuuCGCGggGGCAGCg- -3'
miRNA:   3'- -GGUG-------UCGUCGUCCG--------GCGU--UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 8847 0.67 0.527807
Target:  5'- -gACGGCAGC-GGCCGUcAGCAc--- -3'
miRNA:   3'- ggUGUCGUCGuCCGGCGuUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 11589 0.66 0.626189
Target:  5'- cCCAcCAGCaccuccgacgucuGGCcGGCCagcGCAGGCAGCg- -3'
miRNA:   3'- -GGU-GUCG-------------UCGuCCGG---CGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 38984 0.66 0.604924
Target:  5'- gCCGC-GCAGCAGGUCGgccagcCGAGgGGCg- -3'
miRNA:   3'- -GGUGuCGUCGUCCGGC------GUUCgUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.