miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 48438 0.72 0.280872
Target:  5'- gCAUGGaCGGCgAGGCCGCGAGCAu--- -3'
miRNA:   3'- gGUGUC-GUCG-UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 22262 0.72 0.295611
Target:  5'- -aGCGGCAGCAGGCCGaguGgAACg- -3'
miRNA:   3'- ggUGUCGUCGUCCGGCguuCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 42712 0.71 0.310944
Target:  5'- gCCACGGCgcGGCAGGCCG--GGCAGu-- -3'
miRNA:   3'- -GGUGUCG--UCGUCCGGCguUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 29474 0.71 0.310944
Target:  5'- aCgACGGCGGCAgGGCCGUAcuuGGCcaggAACUGc -3'
miRNA:   3'- -GgUGUCGUCGU-CCGGCGU---UCG----UUGAC- -5'
11404 5' -55.9 NC_003085.1 + 3555 0.71 0.310944
Target:  5'- aCCACgcucaaGGCGGcCGGGCgGCAAGCGcgccucGCUGc -3'
miRNA:   3'- -GGUG------UCGUC-GUCCGgCGUUCGU------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 22099 0.71 0.310944
Target:  5'- gCGCAGaAGCAGGCCGCccAGCAGa-- -3'
miRNA:   3'- gGUGUCgUCGUCCGGCGu-UCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 42765 0.71 0.318835
Target:  5'- gCGguGCAGgGcGGCCGCAAGCcGCUc -3'
miRNA:   3'- gGUguCGUCgU-CCGGCGUUCGuUGAc -5'
11404 5' -55.9 NC_003085.1 + 17822 0.71 0.326875
Target:  5'- gCCGCcuguGCGGCAGGCCcCuggGGCAguGCUGg -3'
miRNA:   3'- -GGUGu---CGUCGUCCGGcGu--UCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 7956 0.71 0.326875
Target:  5'- gCC-CGGUAGCcgaugaagucGGGCCGguAGCAgcGCUGg -3'
miRNA:   3'- -GGuGUCGUCG----------UCCGGCguUCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 2783 0.71 0.326875
Target:  5'- -gGCAGCGGCGGcGCUcCAGGCGGCg- -3'
miRNA:   3'- ggUGUCGUCGUC-CGGcGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 570 0.71 0.343403
Target:  5'- gCGCGGCuGGCGGGCCaaugcuccguguGCG-GCGACUGc -3'
miRNA:   3'- gGUGUCG-UCGUCCGG------------CGUuCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 9089 0.71 0.343403
Target:  5'- gCCAgaGGCGuCAGcGCCGCGGGCAGCa- -3'
miRNA:   3'- -GGUg-UCGUcGUC-CGGCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 30051 0.71 0.35189
Target:  5'- gCACAaguuGCAGCAGGCC-CAGGcCGGCa- -3'
miRNA:   3'- gGUGU----CGUCGUCCGGcGUUC-GUUGac -5'
11404 5' -55.9 NC_003085.1 + 13872 0.71 0.35189
Target:  5'- cCCGCGccCGGCAaGCCGCAAGCucuACUGc -3'
miRNA:   3'- -GGUGUc-GUCGUcCGGCGUUCGu--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 41254 0.7 0.387303
Target:  5'- gCCACGcGCGGCAGGCUggacugGCGGGCcauGCa- -3'
miRNA:   3'- -GGUGU-CGUCGUCCGG------CGUUCGu--UGac -5'
11404 5' -55.9 NC_003085.1 + 21109 0.7 0.396515
Target:  5'- gCCACGGCGGU--GCCGCGgauGGCGAUa- -3'
miRNA:   3'- -GGUGUCGUCGucCGGCGU---UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39268 0.69 0.405867
Target:  5'- cCCGCGGgugAGCAGGUCGCGcauuGCAGCc- -3'
miRNA:   3'- -GGUGUCg--UCGUCCGGCGUu---CGUUGac -5'
11404 5' -55.9 NC_003085.1 + 24879 0.69 0.405867
Target:  5'- cCUGCAGCGGCgcccaguuccaGGGCCGCcucaucgccGAGUAACa- -3'
miRNA:   3'- -GGUGUCGUCG-----------UCCGGCG---------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 37054 0.69 0.415357
Target:  5'- gCGCAGCGGCcccGCCGgguCGAGCAGCa- -3'
miRNA:   3'- gGUGUCGUCGuc-CGGC---GUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 20046 0.69 0.433757
Target:  5'- gCCugAGCcuccgccaugGGCuGGCCGCGcuggcgcAGCAACUc -3'
miRNA:   3'- -GGugUCG----------UCGuCCGGCGU-------UCGUUGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.