miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 49128 0.67 0.548451
Target:  5'- gCCGCccuucuuGGCGGCGGGCuucuucuuCGCGggGGCAGCg- -3'
miRNA:   3'- -GGUG-------UCGUCGUCCG--------GCGU--UCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 48844 0.67 0.527807
Target:  5'- gCGCAGCAcaacccgccGUAGGCCGCGAcgGGCUu -3'
miRNA:   3'- gGUGUCGU---------CGUCCGGCGUUcgUUGAc -5'
11404 5' -55.9 NC_003085.1 + 48688 1.09 0.000603
Target:  5'- gCCACAGCAGCAGGCCGCAAGCAACUGc -3'
miRNA:   3'- -GGUGUCGUCGUCCGGCGUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 48438 0.72 0.280872
Target:  5'- gCAUGGaCGGCgAGGCCGCGAGCAu--- -3'
miRNA:   3'- gGUGUC-GUCG-UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 48388 0.74 0.221717
Target:  5'- gCGCGGCgAGCAGcGCCGCAuugucugccucGGCGgcGCUGg -3'
miRNA:   3'- gGUGUCG-UCGUC-CGGCGU-----------UCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 48288 0.66 0.593763
Target:  5'- gCCcCGGCAGCgucguAGGCCcuaccGCAAGCGAg-- -3'
miRNA:   3'- -GGuGUCGUCG-----UCCGG-----CGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 47139 0.67 0.517058
Target:  5'- aCCGaugaAGCGGC-GGCCGguGGCGAg-- -3'
miRNA:   3'- -GGUg---UCGUCGuCCGGCguUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 46914 0.67 0.538639
Target:  5'- gUCACcGCGGCAGGCgGCAcaGGUucGGCg- -3'
miRNA:   3'- -GGUGuCGUCGUCCGgCGU--UCG--UUGac -5'
11404 5' -55.9 NC_003085.1 + 43591 0.81 0.069384
Target:  5'- gCCACGGCAG-AGGUCGCAGGC-GCUGc -3'
miRNA:   3'- -GGUGUCGUCgUCCGGCGUUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 43358 0.72 0.273724
Target:  5'- uUCGCGGCGucGUAGGCgGCAAGCAGg-- -3'
miRNA:   3'- -GGUGUCGU--CGUCCGgCGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 42765 0.71 0.318835
Target:  5'- gCGguGCAGgGcGGCCGCAAGCcGCUc -3'
miRNA:   3'- gGUguCGUCgU-CCGGCGUUCGuUGAc -5'
11404 5' -55.9 NC_003085.1 + 42712 0.71 0.310944
Target:  5'- gCCACGGCgcGGCAGGCCG--GGCAGu-- -3'
miRNA:   3'- -GGUGUCG--UCGUCCGGCguUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 41559 0.68 0.506398
Target:  5'- gCCGCGGCGGCA-GUCGCGGG-AGCc- -3'
miRNA:   3'- -GGUGUCGUCGUcCGGCGUUCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 41254 0.7 0.387303
Target:  5'- gCCACGcGCGGCAGGCUggacugGCGGGCcauGCa- -3'
miRNA:   3'- -GGUGU-CGUCGUCCGG------CGUUCGu--UGac -5'
11404 5' -55.9 NC_003085.1 + 41043 0.76 0.146782
Target:  5'- uCCugGGCggcuuGGCGGGCUGCuacGCGACUGg -3'
miRNA:   3'- -GGugUCG-----UCGUCCGGCGuu-CGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 41002 0.67 0.527807
Target:  5'- gCC-CAGCGGCGucgucaucGCCGUggGCGucGCUGg -3'
miRNA:   3'- -GGuGUCGUCGUc-------CGGCGuuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 40327 0.66 0.604924
Target:  5'- uCCGcCAGguGCcgcucccagagAGGUCGCGacAGCAACUc -3'
miRNA:   3'- -GGU-GUCguCG-----------UCCGGCGU--UCGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 39897 0.67 0.568236
Target:  5'- uCgGCGGCGGCAGGCCaaacGCcgcucuuugggaugGGGUcGCUGg -3'
miRNA:   3'- -GgUGUCGUCGUCCGG----CG--------------UUCGuUGAC- -5'
11404 5' -55.9 NC_003085.1 + 39659 0.66 0.582636
Target:  5'- aCACcgAGCGGCGcGCgCGUGAGCAGCa- -3'
miRNA:   3'- gGUG--UCGUCGUcCG-GCGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39617 0.74 0.203941
Target:  5'- gCACcgAGCAGguGGCCGCAGgaguggcGCAACUu -3'
miRNA:   3'- gGUG--UCGUCguCCGGCGUU-------CGUUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.