miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 21335 0.69 0.246738
Target:  5'- gCGUcgGCCGCAgcaACUGCAccugcuucuGGCG-CGCGCu -3'
miRNA:   3'- -GCG--CGGCGU---UGACGU---------CCGCuGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 21802 0.68 0.300892
Target:  5'- uCGcCGCCGUAGucGguGGCGAUGCgGCGu -3'
miRNA:   3'- -GC-GCGGCGUUgaCguCCGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 22058 0.67 0.331238
Target:  5'- uGCGcCCGCGg--GCAGGUaccACGCGCGc -3'
miRNA:   3'- gCGC-GGCGUugaCGUCCGc--UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 22531 0.66 0.372249
Target:  5'- aGCGCCGCGcguACaUGCAGGCcaACG-GCc -3'
miRNA:   3'- gCGCGGCGU---UG-ACGUCCGc-UGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 22758 0.72 0.146111
Target:  5'- cCGCGCCGaCGACgcccgccgcGguGGCGACG-GCAg -3'
miRNA:   3'- -GCGCGGC-GUUGa--------CguCCGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 23188 0.68 0.28165
Target:  5'- uGCGUgGCAaacguccauugcuGCUGCAGGUGcguccacugguaguCGCGCAc -3'
miRNA:   3'- gCGCGgCGU-------------UGACGUCCGCu-------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 23255 0.67 0.323445
Target:  5'- cCGCGCCGCccGC-GCacaAGGCGcagcucguCGCGCAa -3'
miRNA:   3'- -GCGCGGCGu-UGaCG---UCCGCu-------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 23572 0.66 0.372249
Target:  5'- gGCGuuGCGAUgucGCuGGagGACGCGUAc -3'
miRNA:   3'- gCGCggCGUUGa--CGuCCg-CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 23637 0.67 0.347234
Target:  5'- gGUGCUucaGCAGCgcgaGCAGGC--CGCGCAg -3'
miRNA:   3'- gCGCGG---CGUUGa---CGUCCGcuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 24595 0.67 0.308273
Target:  5'- gGCGCCGC---UGCAGGUGAgGuUGCc -3'
miRNA:   3'- gCGCGGCGuugACGUCCGCUgC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 24662 0.66 0.389594
Target:  5'- gCGCGCCGCGACggGCuGaGCGGCa---- -3'
miRNA:   3'- -GCGCGGCGUUGa-CGuC-CGCUGcgcgu -5'
11408 5' -60.9 NC_003085.1 + 24799 0.66 0.389594
Target:  5'- gGUGCCGCu-CaGCccgucGCGGCGCGCGg -3'
miRNA:   3'- gCGCGGCGuuGaCGuc---CGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 25238 0.69 0.228612
Target:  5'- gGCGCCGCccugguGCgcuccgcgGCGGGCGucgucgucgGCGCGCc -3'
miRNA:   3'- gCGCGGCGu-----UGa-------CGUCCGC---------UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 26032 0.66 0.363776
Target:  5'- -cUGCUGCGcCUGCuGGGCGAaGCGCu -3'
miRNA:   3'- gcGCGGCGUuGACG-UCCGCUgCGCGu -5'
11408 5' -60.9 NC_003085.1 + 26034 0.67 0.331238
Target:  5'- uGCGCCaGCAGUUGaaggagcaGGGCGA-GCGCAu -3'
miRNA:   3'- gCGCGG-CGUUGACg-------UCCGCUgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 26103 0.68 0.293649
Target:  5'- aGUGCUGgGGCUGCGccucGGCGGCcggcgGCGCu -3'
miRNA:   3'- gCGCGGCgUUGACGU----CCGCUG-----CGCGu -5'
11408 5' -60.9 NC_003085.1 + 26133 0.66 0.389594
Target:  5'- aCGCgGCCGUggaacucgGGCUGCuGGCcaccGACGuCGCGg -3'
miRNA:   3'- -GCG-CGGCG--------UUGACGuCCG----CUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 26207 0.69 0.234526
Target:  5'- uGCGCCuuguGC-GCGGGCGGCGCGg- -3'
miRNA:   3'- gCGCGGcgu-UGaCGUCCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 26457 0.73 0.127581
Target:  5'- gGCGCCagGACUGC-GGCG-CGCGCAc -3'
miRNA:   3'- gCGCGGcgUUGACGuCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 26712 0.67 0.31579
Target:  5'- aGCGCgCGCAGg-GC-GGUGACgGCGCGg -3'
miRNA:   3'- gCGCG-GCGUUgaCGuCCGCUG-CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.