miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 12385 0.66 0.362936
Target:  5'- gCGCGCCGUccacCUGCAuccgcacgucgucGGCGccaGCGCGg -3'
miRNA:   3'- -GCGCGGCGuu--GACGU-------------CCGCug-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 13873 0.67 0.34561
Target:  5'- cCGCGCCcgGCAagccgcaagcucuACUGCuccaaccGGuGCGGCGUGCGc -3'
miRNA:   3'- -GCGCGG--CGU-------------UGACG-------UC-CGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 14353 0.66 0.407459
Target:  5'- gGgGCCGgAcCUGCcacucaacgGGGUGACGuCGCAg -3'
miRNA:   3'- gCgCGGCgUuGACG---------UCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 14666 0.66 0.407459
Target:  5'- aGCGCgGCAAggacUUGgAGGCgccGugGCGCu -3'
miRNA:   3'- gCGCGgCGUU----GACgUCCG---CugCGCGu -5'
11408 5' -60.9 NC_003085.1 + 14909 0.68 0.300892
Target:  5'- gGCGCaCGCGggccgGCUGguGGCGcuCGCGg- -3'
miRNA:   3'- gCGCG-GCGU-----UGACguCCGCu-GCGCgu -5'
11408 5' -60.9 NC_003085.1 + 15125 0.69 0.259472
Target:  5'- aGCGCCGCGccGC-GUGGuGCGACGaGCAc -3'
miRNA:   3'- gCGCGGCGU--UGaCGUC-CGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 15210 0.74 0.111246
Target:  5'- cCGCGCCGCGGaaGUGGGCGAgguggacuUGCGCc -3'
miRNA:   3'- -GCGCGGCGUUgaCGUCCGCU--------GCGCGu -5'
11408 5' -60.9 NC_003085.1 + 16509 0.67 0.331238
Target:  5'- -uCGCCGCAA--GCAuGGCaGGCGCGCc -3'
miRNA:   3'- gcGCGGCGUUgaCGU-CCG-CUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 17691 0.68 0.293649
Target:  5'- aCGCgGCCagGCAGgaGCAGGUGugGCuCAa -3'
miRNA:   3'- -GCG-CGG--CGUUgaCGUCCGCugCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 17849 0.66 0.363776
Target:  5'- aGUGCUGguGCccGCAGGCGcCGUuuGCAg -3'
miRNA:   3'- gCGCGGCguUGa-CGUCCGCuGCG--CGU- -5'
11408 5' -60.9 NC_003085.1 + 17972 0.68 0.272738
Target:  5'- aGCGCCgGCAGC-GCGGGCcGCaGgGCAc -3'
miRNA:   3'- gCGCGG-CGUUGaCGUCCGcUG-CgCGU- -5'
11408 5' -60.9 NC_003085.1 + 18654 0.67 0.331238
Target:  5'- uCGC-CCGCGgugAUUGCu-GCGGCGCGCu -3'
miRNA:   3'- -GCGcGGCGU---UGACGucCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 18758 0.66 0.372249
Target:  5'- aGcCGCCGCuGgaGCGGGCGAUGgacaaaGCGa -3'
miRNA:   3'- gC-GCGGCGuUgaCGUCCGCUGCg-----CGU- -5'
11408 5' -60.9 NC_003085.1 + 18769 0.68 0.300892
Target:  5'- uGCGCCGCuuCgccuccucaGCAGccaauGCGAgGCGCAg -3'
miRNA:   3'- gCGCGGCGuuGa--------CGUC-----CGCUgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 19063 0.69 0.240567
Target:  5'- gCGCGCgGCGGa-GCAGGCGcCGgGCc -3'
miRNA:   3'- -GCGCGgCGUUgaCGUCCGCuGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 19209 0.66 0.389594
Target:  5'- gGgGCgGCGGggGCuGGGCGcCGCGCAa -3'
miRNA:   3'- gCgCGgCGUUgaCG-UCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 20089 0.71 0.171567
Target:  5'- gCGCGCUGUGACgugccGCAGGUGGCGgGg- -3'
miRNA:   3'- -GCGCGGCGUUGa----CGUCCGCUGCgCgu -5'
11408 5' -60.9 NC_003085.1 + 20290 0.72 0.146111
Target:  5'- gGCGCUGCcACUGCGGguccaaccGCGACGuCGCc -3'
miRNA:   3'- gCGCGGCGuUGACGUC--------CGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 20354 0.68 0.286543
Target:  5'- cCGCGCCGCGucgccGCUGCuGaCGcCGgGCAa -3'
miRNA:   3'- -GCGCGGCGU-----UGACGuCcGCuGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 20606 0.78 0.052174
Target:  5'- aGCGCCGCGGaaGuCGGGCGGCGCGgGu -3'
miRNA:   3'- gCGCGGCGUUgaC-GUCCGCUGCGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.