miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 29191 0.73 0.120796
Target:  5'- aGCGCCGCGAggacGCGGaGCGcACGCGCc -3'
miRNA:   3'- gCGCGGCGUUga--CGUC-CGC-UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 15210 0.74 0.111246
Target:  5'- cCGCGCCGCGGaaGUGGGCGAgguggacuUGCGCc -3'
miRNA:   3'- -GCGCGGCGUUgaCGUCCGCU--------GCGCGu -5'
11408 5' -60.9 NC_003085.1 + 7469 0.75 0.096885
Target:  5'- gGCGUCGCGccucacGCUGgAGGUGACGgGCGu -3'
miRNA:   3'- gCGCGGCGU------UGACgUCCGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 48399 0.76 0.084289
Target:  5'- aGCGCCGCAuuguCUGCcucGGCGGCGCugGCu -3'
miRNA:   3'- gCGCGGCGUu---GACGu--CCGCUGCG--CGu -5'
11408 5' -60.9 NC_003085.1 + 30807 0.76 0.073264
Target:  5'- gCGCGCCGCAGCaaucaccGCGGGCGACaagGCAa -3'
miRNA:   3'- -GCGCGGCGUUGa------CGUCCGCUGcg-CGU- -5'
11408 5' -60.9 NC_003085.1 + 28473 0.71 0.185729
Target:  5'- gGCGCUcacCGGCUGCGuGCuGACGCGCAa -3'
miRNA:   3'- gCGCGGc--GUUGACGUcCG-CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8742 0.71 0.189179
Target:  5'- gCGCGCCuucguggccaaGCGGCUcGUcacuaacgaggcgaAGGUGGCGCGCAg -3'
miRNA:   3'- -GCGCGG-----------CGUUGA-CG--------------UCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 27654 0.69 0.259472
Target:  5'- gGaCGCCGCAucgccaccgacuACgGC-GGCGACGUGCu -3'
miRNA:   3'- gC-GCGGCGU------------UGaCGuCCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 15125 0.69 0.259472
Target:  5'- aGCGCCGCGccGC-GUGGuGCGACGaGCAc -3'
miRNA:   3'- gCGCGGCGU--UGaCGUC-CGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 7502 0.69 0.249243
Target:  5'- cCGCGUCgaGCggUUGCAGGacaucaccgacgagGACGCGCGg -3'
miRNA:   3'- -GCGCGG--CGuuGACGUCCg-------------CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8149 0.69 0.249243
Target:  5'- aGCGCCGCGcau-CAGGCGAacgagucaaggugcuUGCGCAg -3'
miRNA:   3'- gCGCGGCGUugacGUCCGCU---------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 44318 0.69 0.246738
Target:  5'- gGUGuuGCGACauggaUGCcuGGGCGGCGaCGCGg -3'
miRNA:   3'- gCGCggCGUUG-----ACG--UCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 19063 0.69 0.240567
Target:  5'- gCGCGCgGCGGa-GCAGGCGcCGgGCc -3'
miRNA:   3'- -GCGCGgCGUUgaCGUCCGCuGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 38844 0.69 0.228612
Target:  5'- cCGCGUCGUcccACUGCGa-CGGCGCGCGg -3'
miRNA:   3'- -GCGCGGCGu--UGACGUccGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 25238 0.69 0.228612
Target:  5'- gGCGCCGCccugguGCgcuccgcgGCGGGCGucgucgucgGCGCGCc -3'
miRNA:   3'- gCGCGGCGu-----UGa-------CGUCCGC---------UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 10821 0.7 0.222825
Target:  5'- aCGCGCaccgggcaGCGACUGCGGGaguggGAUGCGa- -3'
miRNA:   3'- -GCGCGg-------CGUUGACGUCCg----CUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 5313 0.7 0.222825
Target:  5'- gCGCGCCGUc-CUGaAGGCGACcgagaaGCGCGu -3'
miRNA:   3'- -GCGCGGCGuuGACgUCCGCUG------CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 5525 0.7 0.206208
Target:  5'- aCGUGCuCGC-ACUGguGcGCGaaguGCGCGCAa -3'
miRNA:   3'- -GCGCG-GCGuUGACguC-CGC----UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 30680 0.7 0.195735
Target:  5'- uGCGCCucGCAuugGCUGCugaggAGGCGAagcgGCGCAa -3'
miRNA:   3'- gCGCGG--CGU---UGACG-----UCCGCUg---CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39603 0.71 0.190674
Target:  5'- gCGCGUCGCGgaGCgcaccgaGCAGGUGGC-CGCAg -3'
miRNA:   3'- -GCGCGGCGU--UGa------CGUCCGCUGcGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.