miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 47370 0.69 0.240567
Target:  5'- gGCGCCG-AGgUGC-GGCGGCuGCGCu -3'
miRNA:   3'- gCGCGGCgUUgACGuCCGCUG-CGCGu -5'
11408 5' -60.9 NC_003085.1 + 21335 0.69 0.246738
Target:  5'- gCGUcgGCCGCAgcaACUGCAccugcuucuGGCG-CGCGCu -3'
miRNA:   3'- -GCG--CGGCGU---UGACGU---------CCGCuGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 43698 0.69 0.246738
Target:  5'- aCGCGCCGCucaa--GGGgGAUGCGCu -3'
miRNA:   3'- -GCGCGGCGuugacgUCCgCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 44318 0.69 0.246738
Target:  5'- gGUGuuGCGACauggaUGCcuGGGCGGCGaCGCGg -3'
miRNA:   3'- gCGCggCGUUG-----ACG--UCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 7502 0.69 0.249243
Target:  5'- cCGCGUCgaGCggUUGCAGGacaucaccgacgagGACGCGCGg -3'
miRNA:   3'- -GCGCGG--CGuuGACGUCCg-------------CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8149 0.69 0.249243
Target:  5'- aGCGCCGCGcau-CAGGCGAacgagucaaggugcuUGCGCAg -3'
miRNA:   3'- gCGCGGCGUugacGUCCGCU---------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 731 0.69 0.253039
Target:  5'- aCGCGCCGCucACgGaCAGGCGAgagGUGCu -3'
miRNA:   3'- -GCGCGGCGu-UGaC-GUCCGCUg--CGCGu -5'
11408 5' -60.9 NC_003085.1 + 33242 0.69 0.259472
Target:  5'- aCGCcaGCCGCGAUgaggaGCAcGGCGAggaGCGCGg -3'
miRNA:   3'- -GCG--CGGCGUUGa----CGU-CCGCUg--CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 27654 0.69 0.259472
Target:  5'- gGaCGCCGCAucgccaccgacuACgGC-GGCGACGUGCu -3'
miRNA:   3'- gC-GCGGCGU------------UGaCGuCCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 15125 0.69 0.259472
Target:  5'- aGCGCCGCGccGC-GUGGuGCGACGaGCAc -3'
miRNA:   3'- gCGCGGCGU--UGaCGUC-CGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 11584 0.68 0.266039
Target:  5'- cCGCGCCugGCuggAACgggGCAgGGCGGCGCGa- -3'
miRNA:   3'- -GCGCGG--CG---UUGa--CGU-CCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 34704 0.68 0.272062
Target:  5'- gGCGCCGg--UUGCAuggccacGGCGGCGCGUg -3'
miRNA:   3'- gCGCGGCguuGACGU-------CCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 17972 0.68 0.272738
Target:  5'- aGCGCCgGCAGC-GCGGGCcGCaGgGCAc -3'
miRNA:   3'- gCGCGG-CGUUGaCGUCCGcUG-CgCGU- -5'
11408 5' -60.9 NC_003085.1 + 42825 0.68 0.272738
Target:  5'- aCGgGUC-CGGC-GCuGGCGGCGCGCGu -3'
miRNA:   3'- -GCgCGGcGUUGaCGuCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 9495 0.68 0.272738
Target:  5'- aCGuCGCgGUGACgau-GGCGGCGCGCGg -3'
miRNA:   3'- -GC-GCGgCGUUGacguCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 28123 0.68 0.279573
Target:  5'- gCGCGCUcCAGCa--GGGUGAUGCGCGu -3'
miRNA:   3'- -GCGCGGcGUUGacgUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 38748 0.68 0.279573
Target:  5'- cCGCuuGCCGuCAGCcagugccucGCGGGCcGCGCGCAg -3'
miRNA:   3'- -GCG--CGGC-GUUGa--------CGUCCGcUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 23188 0.68 0.28165
Target:  5'- uGCGUgGCAaacguccauugcuGCUGCAGGUGcguccacugguaguCGCGCAc -3'
miRNA:   3'- gCGCGgCGU-------------UGACGUCCGCu-------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 1324 0.68 0.28584
Target:  5'- cCGCGCUGgAggaggcagcccagACUGCuGGCGACGuUGCc -3'
miRNA:   3'- -GCGCGGCgU-------------UGACGuCCGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 38981 0.68 0.286543
Target:  5'- uGCGCCGC-GCaGCAGGuCGGCcagccgagggGCGCc -3'
miRNA:   3'- gCGCGGCGuUGaCGUCC-GCUG----------CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.