miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 12053 0.71 0.175247
Target:  5'- uGCGCCGCuucgcgggcuaccccGgggcgauucucgucuACgggGCGGGUGACGCGCGc -3'
miRNA:   3'- gCGCGGCG---------------U---------------UGa--CGUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 34910 0.71 0.180898
Target:  5'- gGCGUgGCGGCcuacgaguggUGCAGGCGcACGCgGCGg -3'
miRNA:   3'- gCGCGgCGUUG----------ACGUCCGC-UGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 29138 0.71 0.185241
Target:  5'- gGCGauugaguCCGCcuACUcGCAGGCGACGuCGCGg -3'
miRNA:   3'- gCGC-------GGCGu-UGA-CGUCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 28473 0.71 0.185729
Target:  5'- gGCGCUcacCGGCUGCGuGCuGACGCGCAa -3'
miRNA:   3'- gCGCGGc--GUUGACGUcCG-CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8742 0.71 0.189179
Target:  5'- gCGCGCCuucguggccaaGCGGCUcGUcacuaacgaggcgaAGGUGGCGCGCAg -3'
miRNA:   3'- -GCGCGG-----------CGUUGA-CG--------------UCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39603 0.71 0.190674
Target:  5'- gCGCGUCGCGgaGCgcaccgaGCAGGUGGC-CGCAg -3'
miRNA:   3'- -GCGCGGCGU--UGa------CGUCCGCUGcGCGU- -5'
11408 5' -60.9 NC_003085.1 + 30680 0.7 0.195735
Target:  5'- uGCGCCucGCAuugGCUGCugaggAGGCGAagcgGCGCAa -3'
miRNA:   3'- gCGCGG--CGU---UGACG-----UCCGCUg---CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 5525 0.7 0.206208
Target:  5'- aCGUGCuCGC-ACUGguGcGCGaaguGCGCGCAa -3'
miRNA:   3'- -GCGCG-GCGuUGACguC-CGC----UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 2633 0.7 0.206208
Target:  5'- gGCGUCGCAACUcggcgGCgAGGUGAUGcCGCc -3'
miRNA:   3'- gCGCGGCGUUGA-----CG-UCCGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 27949 0.7 0.20836
Target:  5'- aGCGCCGCGACgacggGCuccaAGGgGAaccaguccaccacgcCGCGCAg -3'
miRNA:   3'- gCGCGGCGUUGa----CG----UCCgCU---------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 30510 0.7 0.211078
Target:  5'- gCGCGCCaccgucgGCGGggccCUGUAGGCGAUgGCGCu -3'
miRNA:   3'- -GCGCGG-------CGUU----GACGUCCGCUG-CGCGu -5'
11408 5' -60.9 NC_003085.1 + 5313 0.7 0.222825
Target:  5'- gCGCGCCGUc-CUGaAGGCGACcgagaaGCGCGu -3'
miRNA:   3'- -GCGCGGCGuuGACgUCCGCUG------CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 10821 0.7 0.222825
Target:  5'- aCGCGCaccgggcaGCGACUGCGGGaguggGAUGCGa- -3'
miRNA:   3'- -GCGCGg-------CGUUGACGUCCg----CUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 37870 0.7 0.222825
Target:  5'- uCGCGCCGCc-CUGCcccguuccagccAGGCG-CGgGCAg -3'
miRNA:   3'- -GCGCGGCGuuGACG------------UCCGCuGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 40287 0.69 0.228612
Target:  5'- cCGCGCCGaCccacagacucagGACUGCGcGGCGGCGaGCu -3'
miRNA:   3'- -GCGCGGC-G------------UUGACGU-CCGCUGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 25238 0.69 0.228612
Target:  5'- gGCGCCGCccugguGCgcuccgcgGCGGGCGucgucgucgGCGCGCc -3'
miRNA:   3'- gCGCGGCGu-----UGa-------CGUCCGC---------UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 38844 0.69 0.228612
Target:  5'- cCGCGUCGUcccACUGCGa-CGGCGCGCGg -3'
miRNA:   3'- -GCGCGGCGu--UGACGUccGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 26207 0.69 0.234526
Target:  5'- uGCGCCuuguGC-GCGGGCGGCGCGg- -3'
miRNA:   3'- gCGCGGcgu-UGaCGUCCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 10678 0.69 0.240567
Target:  5'- aGCGCaGCGACga-GGGCGA-GCGCAa -3'
miRNA:   3'- gCGCGgCGUUGacgUCCGCUgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 19063 0.69 0.240567
Target:  5'- gCGCGCgGCGGa-GCAGGCGcCGgGCc -3'
miRNA:   3'- -GCGCGgCGUUgaCGUCCGCuGCgCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.