miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 6288 0.66 0.389594
Target:  5'- cCGCGCggcgguggaGCGACUggaGCAGGCcGAgcgggaacCGCGCAg -3'
miRNA:   3'- -GCGCGg--------CGUUGA---CGUCCG-CU--------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 6936 0.68 0.300892
Target:  5'- gGCGaaGCGggagGCcacGCAGGUGGCGUGCGa -3'
miRNA:   3'- gCGCggCGU----UGa--CGUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 7469 0.75 0.096885
Target:  5'- gGCGUCGCGccucacGCUGgAGGUGACGgGCGu -3'
miRNA:   3'- gCGCGGCGU------UGACgUCCGCUGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 7502 0.69 0.249243
Target:  5'- cCGCGUCgaGCggUUGCAGGacaucaccgacgagGACGCGCGg -3'
miRNA:   3'- -GCGCGG--CGuuGACGUCCg-------------CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8149 0.69 0.249243
Target:  5'- aGCGCCGCGcau-CAGGCGAacgagucaaggugcuUGCGCAg -3'
miRNA:   3'- gCGCGGCGUugacGUCCGCU---------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8742 0.71 0.189179
Target:  5'- gCGCGCCuucguggccaaGCGGCUcGUcacuaacgaggcgaAGGUGGCGCGCAg -3'
miRNA:   3'- -GCGCGG-----------CGUUGA-CG--------------UCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 8817 0.66 0.372249
Target:  5'- gCGCGgCGCAGCcaGCgucaGGGCGACGaggacgGCAg -3'
miRNA:   3'- -GCGCgGCGUUGa-CG----UCCGCUGCg-----CGU- -5'
11408 5' -60.9 NC_003085.1 + 9027 0.66 0.363776
Target:  5'- aGgGCUGgaCGGCgGCAGGCaGCGCGCc -3'
miRNA:   3'- gCgCGGC--GUUGaCGUCCGcUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 9047 0.68 0.293649
Target:  5'- cCGCgGCUGCAcggGCgGCAGGUGugGUGg- -3'
miRNA:   3'- -GCG-CGGCGU---UGaCGUCCGCugCGCgu -5'
11408 5' -60.9 NC_003085.1 + 9143 0.66 0.363776
Target:  5'- aCGCGCCaGCccUUGCcggcgagguagaGGGCGACGCuGCc -3'
miRNA:   3'- -GCGCGG-CGuuGACG------------UCCGCUGCG-CGu -5'
11408 5' -60.9 NC_003085.1 + 9162 0.66 0.398462
Target:  5'- uCGcCGCCGCGcaguccugaguCUGUGGGuCGGCGCGgGu -3'
miRNA:   3'- -GC-GCGGCGUu----------GACGUCC-GCUGCGCgU- -5'
11408 5' -60.9 NC_003085.1 + 9495 0.68 0.272738
Target:  5'- aCGuCGCgGUGACgau-GGCGGCGCGCGg -3'
miRNA:   3'- -GC-GCGgCGUUGacguCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 9792 0.67 0.31579
Target:  5'- aGCGCCuGCuGCUGCucacGCG-CGCGCc -3'
miRNA:   3'- gCGCGG-CGuUGACGuc--CGCuGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 10191 0.67 0.31579
Target:  5'- aGCGCCGUAGa-GgAGGCG-CGCaGCAc -3'
miRNA:   3'- gCGCGGCGUUgaCgUCCGCuGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 10617 0.74 0.111246
Target:  5'- gCGCGCCGUcGCaGUGGGaCGACGCgGCAg -3'
miRNA:   3'- -GCGCGGCGuUGaCGUCC-GCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 10678 0.69 0.240567
Target:  5'- aGCGCaGCGACga-GGGCGA-GCGCAa -3'
miRNA:   3'- gCGCGgCGUUGacgUCCGCUgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 10821 0.7 0.222825
Target:  5'- aCGCGCaccgggcaGCGACUGCGGGaguggGAUGCGa- -3'
miRNA:   3'- -GCGCGg-------CGUUGACGUCCg----CUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 11497 0.66 0.389594
Target:  5'- aCGCaCCaCAcgaauCUGCGGGUGugGUGCGg -3'
miRNA:   3'- -GCGcGGcGUu----GACGUCCGCugCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 11584 0.68 0.266039
Target:  5'- cCGCGCCugGCuggAACgggGCAgGGCGGCGCGa- -3'
miRNA:   3'- -GCGCGG--CG---UUGa--CGU-CCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 12053 0.71 0.175247
Target:  5'- uGCGCCGCuucgcgggcuaccccGgggcgauucucgucuACgggGCGGGUGACGCGCGc -3'
miRNA:   3'- gCGCGGCG---------------U---------------UGa--CGUCCGCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.