miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 40360 0.66 0.372249
Target:  5'- gGCaaGCCGCuGCUGCccGCGGCGCu-- -3'
miRNA:   3'- gCG--CGGCGuUGACGucCGCUGCGcgu -5'
11408 5' -60.9 NC_003085.1 + 40287 0.69 0.228612
Target:  5'- cCGCGCCGaCccacagacucagGACUGCGcGGCGGCGaGCu -3'
miRNA:   3'- -GCGCGGC-G------------UUGACGU-CCGCUGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 39767 0.66 0.363776
Target:  5'- gGCGCUcCAGuCUGCAGG-GACGC-CAg -3'
miRNA:   3'- gCGCGGcGUU-GACGUCCgCUGCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 39639 0.66 0.363776
Target:  5'- aGUGgCGCAACUucGCGacgacaccGaGCGGCGCGCGc -3'
miRNA:   3'- gCGCgGCGUUGA--CGU--------C-CGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39603 0.71 0.190674
Target:  5'- gCGCGUCGCGgaGCgcaccgaGCAGGUGGC-CGCAg -3'
miRNA:   3'- -GCGCGGCGU--UGa------CGUCCGCUGcGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39114 0.66 0.372249
Target:  5'- aGCGuCCGCGG-UGCcucccgggAGGCGACGUgGCGg -3'
miRNA:   3'- gCGC-GGCGUUgACG--------UCCGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 38981 0.68 0.286543
Target:  5'- uGCGCCGC-GCaGCAGGuCGGCcagccgagggGCGCc -3'
miRNA:   3'- gCGCGGCGuUGaCGUCC-GCUG----------CGCGu -5'
11408 5' -60.9 NC_003085.1 + 38844 0.69 0.228612
Target:  5'- cCGCGUCGUcccACUGCGa-CGGCGCGCGg -3'
miRNA:   3'- -GCGCGGCGu--UGACGUccGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 38748 0.68 0.279573
Target:  5'- cCGCuuGCCGuCAGCcagugccucGCGGGCcGCGCGCAg -3'
miRNA:   3'- -GCG--CGGC-GUUGa--------CGUCCGcUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 37870 0.7 0.222825
Target:  5'- uCGCGCCGCc-CUGCcccguuccagccAGGCG-CGgGCAg -3'
miRNA:   3'- -GCGCGGCGuuGACG------------UCCGCuGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 37160 0.68 0.293649
Target:  5'- uGCGCCGCAACccaGCGGaccaccGCGccgucGCGUGCGa -3'
miRNA:   3'- gCGCGGCGUUGa--CGUC------CGC-----UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 37065 0.77 0.071031
Target:  5'- gGCGCCGaCGACgugcggaUGCAGGUggacGGCGCGCAg -3'
miRNA:   3'- gCGCGGC-GUUG-------ACGUCCG----CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 36356 0.66 0.407459
Target:  5'- cCGCGCucaCGCAcCU-CAGcGCGGCGUGCc -3'
miRNA:   3'- -GCGCG---GCGUuGAcGUC-CGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 34910 0.71 0.180898
Target:  5'- gGCGUgGCGGCcuacgaguggUGCAGGCGcACGCgGCGg -3'
miRNA:   3'- gCGCGgCGUUG----------ACGUCCGC-UGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 34704 0.68 0.272062
Target:  5'- gGCGCCGg--UUGCAuggccacGGCGGCGCGUg -3'
miRNA:   3'- gCGCGGCguuGACGU-------CCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 33242 0.69 0.259472
Target:  5'- aCGCcaGCCGCGAUgaggaGCAcGGCGAggaGCGCGg -3'
miRNA:   3'- -GCG--CGGCGUUGa----CGU-CCGCUg--CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 33191 0.73 0.138047
Target:  5'- uCGCGCCaGUAGCggGCguccuggAGGCGGCgGCGCAg -3'
miRNA:   3'- -GCGCGG-CGUUGa-CG-------UCCGCUG-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 32975 0.8 0.039218
Target:  5'- gGCGCCGuCAGCgacgGgaAGGCGGCGCGCAg -3'
miRNA:   3'- gCGCGGC-GUUGa---Cg-UCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 32855 0.66 0.372249
Target:  5'- gCGCGCCGCGggACcGCccgggAGGCccaGCGCAu -3'
miRNA:   3'- -GCGCGGCGU--UGaCG-----UCCGcugCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 32168 0.72 0.142219
Target:  5'- gGCGUCGgccaGGCUGCGccaguGGUGGCGCGCGu -3'
miRNA:   3'- gCGCGGCg---UUGACGU-----CCGCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.