miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 48921 0.66 0.363776
Target:  5'- uCGCGCCGUucgccaauCUccGCgaGGGCaGCGCGCAu -3'
miRNA:   3'- -GCGCGGCGuu------GA--CG--UCCGcUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 48696 0.67 0.31579
Target:  5'- aGCagGCCGCAagcaACUGC-GGCGACGaacuccgGCAa -3'
miRNA:   3'- gCG--CGGCGU----UGACGuCCGCUGCg------CGU- -5'
11408 5' -60.9 NC_003085.1 + 48639 0.68 0.293649
Target:  5'- aCGCGCuCGaCGAcCUGC-GGCGGCaCGCGg -3'
miRNA:   3'- -GCGCG-GC-GUU-GACGuCCGCUGcGCGU- -5'
11408 5' -60.9 NC_003085.1 + 48507 0.66 0.355437
Target:  5'- aGCGCUGCGACcuccuucucgGC-GGCGAgGgCGCGg -3'
miRNA:   3'- gCGCGGCGUUGa---------CGuCCGCUgC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 48399 0.76 0.084289
Target:  5'- aGCGCCGCAuuguCUGCcucGGCGGCGCugGCu -3'
miRNA:   3'- gCGCGGCGUu---GACGu--CCGCUGCG--CGu -5'
11408 5' -60.9 NC_003085.1 + 47896 1 0.001132
Target:  5'- cCGCGCCGC-ACUGCAGGCGACGCGCAc -3'
miRNA:   3'- -GCGCGGCGuUGACGUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 47751 0.72 0.151724
Target:  5'- aGCGUCGCAauucgacggccaggcGCUcGCAGGCGACuuGUGCu -3'
miRNA:   3'- gCGCGGCGU---------------UGA-CGUCCGCUG--CGCGu -5'
11408 5' -60.9 NC_003085.1 + 47723 0.66 0.372249
Target:  5'- uGCGCCu--GCUGaCGGGCGcgguGCGCGUn -3'
miRNA:   3'- gCGCGGcguUGAC-GUCCGC----UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 47370 0.69 0.240567
Target:  5'- gGCGCCG-AGgUGC-GGCGGCuGCGCu -3'
miRNA:   3'- gCGCGGCgUUgACGuCCGCUG-CGCGu -5'
11408 5' -60.9 NC_003085.1 + 45581 0.67 0.308273
Target:  5'- aGUGCCaccGCGACagacgGCGGGCGcgccgucgACGCGCc -3'
miRNA:   3'- gCGCGG---CGUUGa----CGUCCGC--------UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 45408 0.66 0.398462
Target:  5'- aGCGCCGuCAGCgaaaGCAuGG-GGCGCGg- -3'
miRNA:   3'- gCGCGGC-GUUGa---CGU-CCgCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 44318 0.69 0.246738
Target:  5'- gGUGuuGCGACauggaUGCcuGGGCGGCGaCGCGg -3'
miRNA:   3'- gCGCggCGUUG-----ACG--UCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 43698 0.69 0.246738
Target:  5'- aCGCGCCGCucaa--GGGgGAUGCGCu -3'
miRNA:   3'- -GCGCGGCGuugacgUCCgCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 43619 0.67 0.315032
Target:  5'- gGUGCCGUcccagucccgGAcCUGCAGGgcugacgccucccCGAUGCGCAc -3'
miRNA:   3'- gCGCGGCG----------UU-GACGUCC-------------GCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 43534 0.66 0.407459
Target:  5'- gGCGCCGa------AGGCGGCGCGUc -3'
miRNA:   3'- gCGCGGCguugacgUCCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 43463 0.66 0.355437
Target:  5'- cCGCGCC-CAGCcGUAGGCGA-GC-CAa -3'
miRNA:   3'- -GCGCGGcGUUGaCGUCCGCUgCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 43450 0.67 0.308273
Target:  5'- gGUGCCGC-GCUGCuGaGCGAUGaCGUc -3'
miRNA:   3'- gCGCGGCGuUGACGuC-CGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 42825 0.68 0.272738
Target:  5'- aCGgGUC-CGGC-GCuGGCGGCGCGCGu -3'
miRNA:   3'- -GCgCGGcGUUGaCGuCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 41211 0.66 0.363776
Target:  5'- gGCGuuG-GACUGCucuggcacGGUGACGUGCGg -3'
miRNA:   3'- gCGCggCgUUGACGu-------CCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 40537 0.67 0.347234
Target:  5'- aCGCGCUGC-ACUucGgAGGCGucgAgGCGCAa -3'
miRNA:   3'- -GCGCGGCGuUGA--CgUCCGC---UgCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.