miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 31539 0.67 0.331238
Target:  5'- aGCGCCGCGcuggGC-GCAGGCacccgucuACGaCGCAg -3'
miRNA:   3'- gCGCGGCGU----UGaCGUCCGc-------UGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 31139 0.68 0.293649
Target:  5'- gCGCGuuGCGGCUGCccuucGGaCGGCcaGCGCc -3'
miRNA:   3'- -GCGCggCGUUGACGu----CC-GCUG--CGCGu -5'
11408 5' -60.9 NC_003085.1 + 30807 0.76 0.073264
Target:  5'- gCGCGCCGCAGCaaucaccGCGGGCGACaagGCAa -3'
miRNA:   3'- -GCGCGGCGUUGa------CGUCCGCUGcg-CGU- -5'
11408 5' -60.9 NC_003085.1 + 30680 0.7 0.195735
Target:  5'- uGCGCCucGCAuugGCUGCugaggAGGCGAagcgGCGCAa -3'
miRNA:   3'- gCGCGG--CGU---UGACG-----UCCGCUg---CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 30510 0.7 0.211078
Target:  5'- gCGCGCCaccgucgGCGGggccCUGUAGGCGAUgGCGCu -3'
miRNA:   3'- -GCGCGG-------CGUU----GACGUCCGCUG-CGCGu -5'
11408 5' -60.9 NC_003085.1 + 29534 0.68 0.300892
Target:  5'- aGCGUCuuGGC-GCGGGCGuCGUGCGg -3'
miRNA:   3'- gCGCGGcgUUGaCGUCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 29191 0.73 0.120796
Target:  5'- aGCGCCGCGAggacGCGGaGCGcACGCGCc -3'
miRNA:   3'- gCGCGGCGUUga--CGUC-CGC-UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 29138 0.71 0.185241
Target:  5'- gGCGauugaguCCGCcuACUcGCAGGCGACGuCGCGg -3'
miRNA:   3'- gCGC-------GGCGu-UGA-CGUCCGCUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 29106 0.66 0.389594
Target:  5'- gGCGUCaGCAGCgGCGacGCGGCGCGgAa -3'
miRNA:   3'- gCGCGG-CGUUGaCGUc-CGCUGCGCgU- -5'
11408 5' -60.9 NC_003085.1 + 28473 0.71 0.185729
Target:  5'- gGCGCUcacCGGCUGCGuGCuGACGCGCAa -3'
miRNA:   3'- gCGCGGc--GUUGACGUcCG-CUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 28123 0.68 0.279573
Target:  5'- gCGCGCUcCAGCa--GGGUGAUGCGCGu -3'
miRNA:   3'- -GCGCGGcGUUGacgUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 28115 0.68 0.293649
Target:  5'- gCGCGCCagaagcagguGCAguuGCUGCGGcCGACGCuGCu -3'
miRNA:   3'- -GCGCGG----------CGU---UGACGUCcGCUGCG-CGu -5'
11408 5' -60.9 NC_003085.1 + 27949 0.7 0.20836
Target:  5'- aGCGCCGCGACgacggGCuccaAGGgGAaccaguccaccacgcCGCGCAg -3'
miRNA:   3'- gCGCGGCGUUGa----CG----UCCgCU---------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 27654 0.69 0.259472
Target:  5'- gGaCGCCGCAucgccaccgacuACgGC-GGCGACGUGCu -3'
miRNA:   3'- gC-GCGGCGU------------UGaCGuCCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 27353 0.66 0.355437
Target:  5'- gGCGCCGgGcuCUGCuGGGCGGCcugcuucuGCGCc -3'
miRNA:   3'- gCGCGGCgUu-GACG-UCCGCUG--------CGCGu -5'
11408 5' -60.9 NC_003085.1 + 26712 0.67 0.31579
Target:  5'- aGCGCgCGCAGg-GC-GGUGACgGCGCGg -3'
miRNA:   3'- gCGCG-GCGUUgaCGuCCGCUG-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 26457 0.73 0.127581
Target:  5'- gGCGCCagGACUGC-GGCG-CGCGCAc -3'
miRNA:   3'- gCGCGGcgUUGACGuCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 26207 0.69 0.234526
Target:  5'- uGCGCCuuguGC-GCGGGCGGCGCGg- -3'
miRNA:   3'- gCGCGGcgu-UGaCGUCCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 26133 0.66 0.389594
Target:  5'- aCGCgGCCGUggaacucgGGCUGCuGGCcaccGACGuCGCGg -3'
miRNA:   3'- -GCG-CGGCG--------UUGACGuCCG----CUGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 26103 0.68 0.293649
Target:  5'- aGUGCUGgGGCUGCGccucGGCGGCcggcgGCGCu -3'
miRNA:   3'- gCGCGGCgUUGACGU----CCGCUG-----CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.