miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 40537 0.67 0.347234
Target:  5'- aCGCGCUGC-ACUucGgAGGCGucgAgGCGCAa -3'
miRNA:   3'- -GCGCGGCGuUGA--CgUCCGC---UgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 13873 0.67 0.34561
Target:  5'- cCGCGCCcgGCAagccgcaagcucuACUGCuccaaccGGuGCGGCGUGCGc -3'
miRNA:   3'- -GCGCGG--CGU-------------UGACG-------UC-CGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 2410 0.67 0.339168
Target:  5'- -cCGCCG-AGCUGguGGUgacgaaGACGCGCu -3'
miRNA:   3'- gcGCGGCgUUGACguCCG------CUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 16509 0.67 0.331238
Target:  5'- -uCGCCGCAA--GCAuGGCaGGCGCGCc -3'
miRNA:   3'- gcGCGGCGUUgaCGU-CCG-CUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 26034 0.67 0.331238
Target:  5'- uGCGCCaGCAGUUGaaggagcaGGGCGA-GCGCAu -3'
miRNA:   3'- gCGCGG-CGUUGACg-------UCCGCUgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 22058 0.67 0.331238
Target:  5'- uGCGcCCGCGg--GCAGGUaccACGCGCGc -3'
miRNA:   3'- gCGC-GGCGUugaCGUCCGc--UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 18654 0.67 0.331238
Target:  5'- uCGC-CCGCGgugAUUGCu-GCGGCGCGCu -3'
miRNA:   3'- -GCGcGGCGU---UGACGucCGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 31539 0.67 0.331238
Target:  5'- aGCGCCGCGcuggGC-GCAGGCacccgucuACGaCGCAg -3'
miRNA:   3'- gCGCGGCGU----UGaCGUCCGc-------UGC-GCGU- -5'
11408 5' -60.9 NC_003085.1 + 3489 0.67 0.330452
Target:  5'- gGCG-CGCAuCUGCcgccccaAGGCGACGCuGUAc -3'
miRNA:   3'- gCGCgGCGUuGACG-------UCCGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 1049 0.67 0.323445
Target:  5'- gGCGCCG-AACUGCccGCGugGCu-- -3'
miRNA:   3'- gCGCGGCgUUGACGucCGCugCGcgu -5'
11408 5' -60.9 NC_003085.1 + 23255 0.67 0.323445
Target:  5'- cCGCGCCGCccGC-GCacaAGGCGcagcucguCGCGCAa -3'
miRNA:   3'- -GCGCGGCGu-UGaCG---UCCGCu-------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 10191 0.67 0.31579
Target:  5'- aGCGCCGUAGa-GgAGGCG-CGCaGCAc -3'
miRNA:   3'- gCGCGGCGUUgaCgUCCGCuGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 26712 0.67 0.31579
Target:  5'- aGCGCgCGCAGg-GC-GGUGACgGCGCGg -3'
miRNA:   3'- gCGCG-GCGUUgaCGuCCGCUG-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 9792 0.67 0.31579
Target:  5'- aGCGCCuGCuGCUGCucacGCG-CGCGCc -3'
miRNA:   3'- gCGCGG-CGuUGACGuc--CGCuGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 48696 0.67 0.31579
Target:  5'- aGCagGCCGCAagcaACUGC-GGCGACGaacuccgGCAa -3'
miRNA:   3'- gCG--CGGCGU----UGACGuCCGCUGCg------CGU- -5'
11408 5' -60.9 NC_003085.1 + 43619 0.67 0.315032
Target:  5'- gGUGCCGUcccagucccgGAcCUGCAGGgcugacgccucccCGAUGCGCAc -3'
miRNA:   3'- gCGCGGCG----------UU-GACGUCC-------------GCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 24595 0.67 0.308273
Target:  5'- gGCGCCGC---UGCAGGUGAgGuUGCc -3'
miRNA:   3'- gCGCGGCGuugACGUCCGCUgC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 45581 0.67 0.308273
Target:  5'- aGUGCCaccGCGACagacgGCGGGCGcgccgucgACGCGCc -3'
miRNA:   3'- gCGCGG---CGUUGa----CGUCCGC--------UGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 3582 0.67 0.308273
Target:  5'- gCGCGCCuc-GCUGCcgAGGCGGCGaacugGCAg -3'
miRNA:   3'- -GCGCGGcguUGACG--UCCGCUGCg----CGU- -5'
11408 5' -60.9 NC_003085.1 + 43450 0.67 0.308273
Target:  5'- gGUGCCGC-GCUGCuGaGCGAUGaCGUc -3'
miRNA:   3'- gCGCGGCGuUGACGuC-CGCUGC-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.