miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 43450 0.67 0.308273
Target:  5'- gGUGCCGC-GCUGCuGaGCGAUGaCGUc -3'
miRNA:   3'- gCGCGGCGuUGACGuC-CGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 6936 0.68 0.300892
Target:  5'- gGCGaaGCGggagGCcacGCAGGUGGCGUGCGa -3'
miRNA:   3'- gCGCggCGU----UGa--CGUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 18769 0.68 0.300892
Target:  5'- uGCGCCGCuuCgccuccucaGCAGccaauGCGAgGCGCAg -3'
miRNA:   3'- gCGCGGCGuuGa--------CGUC-----CGCUgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 21802 0.68 0.300892
Target:  5'- uCGcCGCCGUAGucGguGGCGAUGCgGCGu -3'
miRNA:   3'- -GC-GCGGCGUUgaCguCCGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 29534 0.68 0.300892
Target:  5'- aGCGUCuuGGC-GCGGGCGuCGUGCGg -3'
miRNA:   3'- gCGCGGcgUUGaCGUCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 14909 0.68 0.300892
Target:  5'- gGCGCaCGCGggccgGCUGguGGCGcuCGCGg- -3'
miRNA:   3'- gCGCG-GCGU-----UGACguCCGCu-GCGCgu -5'
11408 5' -60.9 NC_003085.1 + 48639 0.68 0.293649
Target:  5'- aCGCGCuCGaCGAcCUGC-GGCGGCaCGCGg -3'
miRNA:   3'- -GCGCG-GC-GUU-GACGuCCGCUGcGCGU- -5'
11408 5' -60.9 NC_003085.1 + 37160 0.68 0.293649
Target:  5'- uGCGCCGCAACccaGCGGaccaccGCGccgucGCGUGCGa -3'
miRNA:   3'- gCGCGGCGUUGa--CGUC------CGC-----UGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 31139 0.68 0.293649
Target:  5'- gCGCGuuGCGGCUGCccuucGGaCGGCcaGCGCc -3'
miRNA:   3'- -GCGCggCGUUGACGu----CC-GCUG--CGCGu -5'
11408 5' -60.9 NC_003085.1 + 9047 0.68 0.293649
Target:  5'- cCGCgGCUGCAcggGCgGCAGGUGugGUGg- -3'
miRNA:   3'- -GCG-CGGCGU---UGaCGUCCGCugCGCgu -5'
11408 5' -60.9 NC_003085.1 + 28115 0.68 0.293649
Target:  5'- gCGCGCCagaagcagguGCAguuGCUGCGGcCGACGCuGCu -3'
miRNA:   3'- -GCGCGG----------CGU---UGACGUCcGCUGCG-CGu -5'
11408 5' -60.9 NC_003085.1 + 17691 0.68 0.293649
Target:  5'- aCGCgGCCagGCAGgaGCAGGUGugGCuCAa -3'
miRNA:   3'- -GCG-CGG--CGUUgaCGUCCGCugCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 4138 0.68 0.293649
Target:  5'- aGCGCCGCucuacggagcGACUGCuGGCGcaacucCGCGa- -3'
miRNA:   3'- gCGCGGCG----------UUGACGuCCGCu-----GCGCgu -5'
11408 5' -60.9 NC_003085.1 + 26103 0.68 0.293649
Target:  5'- aGUGCUGgGGCUGCGccucGGCGGCcggcgGCGCu -3'
miRNA:   3'- gCGCGGCgUUGACGU----CCGCUG-----CGCGu -5'
11408 5' -60.9 NC_003085.1 + 38981 0.68 0.286543
Target:  5'- uGCGCCGC-GCaGCAGGuCGGCcagccgagggGCGCc -3'
miRNA:   3'- gCGCGGCGuUGaCGUCC-GCUG----------CGCGu -5'
11408 5' -60.9 NC_003085.1 + 20354 0.68 0.286543
Target:  5'- cCGCGCCGCGucgccGCUGCuGaCGcCGgGCAa -3'
miRNA:   3'- -GCGCGGCGU-----UGACGuCcGCuGCgCGU- -5'
11408 5' -60.9 NC_003085.1 + 1324 0.68 0.28584
Target:  5'- cCGCGCUGgAggaggcagcccagACUGCuGGCGACGuUGCc -3'
miRNA:   3'- -GCGCGGCgU-------------UGACGuCCGCUGC-GCGu -5'
11408 5' -60.9 NC_003085.1 + 23188 0.68 0.28165
Target:  5'- uGCGUgGCAaacguccauugcuGCUGCAGGUGcguccacugguaguCGCGCAc -3'
miRNA:   3'- gCGCGgCGU-------------UGACGUCCGCu-------------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 28123 0.68 0.279573
Target:  5'- gCGCGCUcCAGCa--GGGUGAUGCGCGu -3'
miRNA:   3'- -GCGCGGcGUUGacgUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 38748 0.68 0.279573
Target:  5'- cCGCuuGCCGuCAGCcagugccucGCGGGCcGCGCGCAg -3'
miRNA:   3'- -GCG--CGGC-GUUGa--------CGUCCGcUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.