Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11409 | 3' | -54.4 | NC_003085.1 | + | 47623 | 1.12 | 0.00069 |
Target: 5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3' miRNA: 3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 34542 | 0.92 | 0.019612 |
Target: 5'- uGGAGCGCCACGcgcUGGcGGCCGGUGCGCa -3' miRNA: 3'- gCUUUGUGGUGU---ACC-UCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 45404 | 0.79 | 0.155938 |
Target: 5'- gCGGAGCGCCgucagcgaaaGCAUGGGGCgCGGUGgCGUc -3' miRNA: 3'- -GCUUUGUGG----------UGUACCUCG-GCCAC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 2208 | 0.76 | 0.240446 |
Target: 5'- aCGAGACACagaaGCcaguggcgcucGUGGAaccGCUGGUGCGCa -3' miRNA: 3'- -GCUUUGUGg---UG-----------UACCU---CGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 5486 | 0.75 | 0.260026 |
Target: 5'- gCGGAcaACGCgGCGUGGGGCCGG-GcCGUg -3' miRNA: 3'- -GCUU--UGUGgUGUACCUCGGCCaC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 39494 | 0.73 | 0.326544 |
Target: 5'- uCGAGGCGCU-CGaGaAGCCGGUGCGCc -3' miRNA: 3'- -GCUUUGUGGuGUaCcUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 40558 | 0.72 | 0.414286 |
Target: 5'- uCGAGGCGCaagGCcuUGGuGgCGGUGCGCa -3' miRNA: 3'- -GCUUUGUGg--UGu-ACCuCgGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 4090 | 0.72 | 0.386473 |
Target: 5'- uGGAGCGcCCGCAcucgccgcUGGAGuuGG-GCGCc -3' miRNA: 3'- gCUUUGU-GGUGU--------ACCUCggCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 12347 | 0.72 | 0.386473 |
Target: 5'- aGGGcacGCGCCACAUGGuGUCGcUGUGCc -3' miRNA: 3'- gCUU---UGUGGUGUACCuCGGCcACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 12698 | 0.71 | 0.443295 |
Target: 5'- gGAuGACGCCACGcc--GCUGGUGCGCu -3' miRNA: 3'- gCU-UUGUGGUGUaccuCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 25736 | 0.71 | 0.433497 |
Target: 5'- --cGGCGCCACGgugGGGGCCGGgGcCGUc -3' miRNA: 3'- gcuUUGUGGUGUa--CCUCGGCCaC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 19684 | 0.71 | 0.433497 |
Target: 5'- aGAAGCauGCCGCca-GGGCCaGUGCGCa -3' miRNA: 3'- gCUUUG--UGGUGuacCUCGGcCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 2488 | 0.7 | 0.494053 |
Target: 5'- gCGAAACGCUcaagGCGUGGcugacGGaCGGUGUGCc -3' miRNA: 3'- -GCUUUGUGG----UGUACC-----UCgGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 16316 | 0.7 | 0.524681 |
Target: 5'- aGAGGCGCCACGUacuggucGaGAGCCuGcgGCGCu -3' miRNA: 3'- gCUUUGUGGUGUA-------C-CUCGGcCa-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 39582 | 0.7 | 0.515094 |
Target: 5'- --cGGCGCCAC-UGGcaAGCUGGaGCGCg -3' miRNA: 3'- gcuUUGUGGUGuACC--UCGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 494 | 0.7 | 0.473413 |
Target: 5'- gCGAGGCugaggGCCuGCGuuUGGAGCCGGUGUc- -3' miRNA: 3'- -GCUUUG-----UGG-UGU--ACCUCGGCCACGcg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 13836 | 0.7 | 0.483681 |
Target: 5'- -cAGACGCCGCccagGGAaguGCCGGaUGUGCg -3' miRNA: 3'- gcUUUGUGGUGua--CCU---CGGCC-ACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 34963 | 0.7 | 0.504527 |
Target: 5'- gGAGGCGCCucACA-GGaAGCCGaugaccucGUGCGCa -3' miRNA: 3'- gCUUUGUGG--UGUaCC-UCGGC--------CACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 26108 | 0.7 | 0.473413 |
Target: 5'- uGggGCugCGCcucGGcGGCCGGcgGCGCu -3' miRNA: 3'- gCuuUGugGUGua-CC-UCGGCCa-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 22468 | 0.69 | 0.53649 |
Target: 5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3' miRNA: 3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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