Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11409 | 3' | -54.4 | NC_003085.1 | + | 32218 | 0.67 | 0.668887 |
Target: 5'- gCGcAACACCGCccaGAGCaCGGgGCGCc -3' miRNA: 3'- -GCuUUGUGGUGuacCUCG-GCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 32535 | 0.69 | 0.547304 |
Target: 5'- gCGggGCcuugcccuCCACGggcgGGGGCUGGgGUGCg -3' miRNA: 3'- -GCuuUGu-------GGUGUa---CCUCGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 34542 | 0.92 | 0.019612 |
Target: 5'- uGGAGCGCCACGcgcUGGcGGCCGGUGCGCa -3' miRNA: 3'- gCUUUGUGGUGU---ACC-UCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 34963 | 0.7 | 0.504527 |
Target: 5'- gGAGGCGCCucACA-GGaAGCCGaugaccucGUGCGCa -3' miRNA: 3'- gCUUUGUGG--UGUaCC-UCGGC--------CACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 35326 | 0.68 | 0.646697 |
Target: 5'- aCGGGuACACCGCG-GGcAGCaCGGUGaUGCc -3' miRNA: 3'- -GCUU-UGUGGUGUaCC-UCG-GCCAC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 36409 | 0.68 | 0.646697 |
Target: 5'- aCGGAAagucacccuCCGCAcGGAGCCGGgacucaccGUGCg -3' miRNA: 3'- -GCUUUgu-------GGUGUaCCUCGGCCa-------CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 37115 | 0.66 | 0.758438 |
Target: 5'- aGcGACACCauguggcGCGUGcccuugcccagguucGGGUCGGUGUGCg -3' miRNA: 3'- gCuUUGUGG-------UGUAC---------------CUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 37657 | 0.69 | 0.547304 |
Target: 5'- uCGggGCACCcgGCgAUGGGGCagccgacacgccCGGaGCGCg -3' miRNA: 3'- -GCuuUGUGG--UG-UACCUCG------------GCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 39494 | 0.73 | 0.326544 |
Target: 5'- uCGAGGCGCU-CGaGaAGCCGGUGCGCc -3' miRNA: 3'- -GCUUUGUGGuGUaCcUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 39582 | 0.7 | 0.515094 |
Target: 5'- --cGGCGCCAC-UGGcaAGCUGGaGCGCg -3' miRNA: 3'- gcuUUGUGGUGuACC--UCGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 40558 | 0.72 | 0.414286 |
Target: 5'- uCGAGGCGCaagGCcuUGGuGgCGGUGCGCa -3' miRNA: 3'- -GCUUUGUGg--UGu-ACCuCgGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 40658 | 0.68 | 0.635577 |
Target: 5'- gGcuGCGCCGCGcaaccucgcGGAGCCGccgGCGCa -3' miRNA: 3'- gCuuUGUGGUGUa--------CCUCGGCca-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 43735 | 0.66 | 0.74484 |
Target: 5'- gCGGGACACCcgaGCcgGGuccGCCccgguGGUGgGCg -3' miRNA: 3'- -GCUUUGUGG---UGuaCCu--CGG-----CCACgCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 44668 | 0.68 | 0.591162 |
Target: 5'- cCGAuGCACaCGCAgUGGGGCUGGa-CGCa -3' miRNA: 3'- -GCUuUGUG-GUGU-ACCUCGGCCacGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 45404 | 0.79 | 0.155938 |
Target: 5'- gCGGAGCGCCgucagcgaaaGCAUGGGGCgCGGUGgCGUc -3' miRNA: 3'- -GCUUUGUGG----------UGUACCUCG-GCCAC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 45854 | 0.67 | 0.679934 |
Target: 5'- gCGgcGCAcguCCAgGcGGAGCCGGUGgGg -3' miRNA: 3'- -GCuuUGU---GGUgUaCCUCGGCCACgCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 47623 | 1.12 | 0.00069 |
Target: 5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3' miRNA: 3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 47715 | 0.67 | 0.679934 |
Target: 5'- uCGAcuGCugCGCcUGcugacGGGCgCGGUGCGCg -3' miRNA: 3'- -GCUu-UGugGUGuAC-----CUCG-GCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 48880 | 0.68 | 0.602235 |
Target: 5'- uCGAGACACCcuGCGgcgGGGGCCGcccUGCa- -3' miRNA: 3'- -GCUUUGUGG--UGUa--CCUCGGCc--ACGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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