miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 3' -54.4 NC_003085.1 + 12347 0.72 0.386473
Target:  5'- aGGGcacGCGCCACAUGGuGUCGcUGUGCc -3'
miRNA:   3'- gCUU---UGUGGUGUACCuCGGCcACGCG- -5'
11409 3' -54.4 NC_003085.1 + 12467 0.67 0.690935
Target:  5'- uGggGCGCCAgCAgugcccugcUGGAGUCGaagcgGCGCc -3'
miRNA:   3'- gCuuUGUGGU-GU---------ACCUCGGCca---CGCG- -5'
11409 3' -54.4 NC_003085.1 + 12698 0.71 0.443295
Target:  5'- gGAuGACGCCACGcc--GCUGGUGCGCu -3'
miRNA:   3'- gCU-UUGUGGUGUaccuCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 13836 0.7 0.483681
Target:  5'- -cAGACGCCGCccagGGAaguGCCGGaUGUGCg -3'
miRNA:   3'- gcUUUGUGGUGua--CCU---CGGCC-ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 14819 0.66 0.712752
Target:  5'- gCGAGGCcAUCGC--GGAG-UGGUGCGCc -3'
miRNA:   3'- -GCUUUG-UGGUGuaCCUCgGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 15180 0.69 0.580123
Target:  5'- --uGACgGCC-CGgcuGAGCCGGUGCGCc -3'
miRNA:   3'- gcuUUG-UGGuGUac-CUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 15601 0.68 0.624453
Target:  5'- aCGAGuCGCCgugcaguugacuACGUGG-GCCGGUG-GCc -3'
miRNA:   3'- -GCUUuGUGG------------UGUACCuCGGCCACgCG- -5'
11409 3' -54.4 NC_003085.1 + 16316 0.7 0.524681
Target:  5'- aGAGGCGCCACGUacuggucGaGAGCCuGcgGCGCu -3'
miRNA:   3'- gCUUUGUGGUGUA-------C-CUCGGcCa-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 18754 0.67 0.701879
Target:  5'- cCGAAGcCGCCGC-UGGAGC-GG-GCGa -3'
miRNA:   3'- -GCUUU-GUGGUGuACCUCGgCCaCGCg -5'
11409 3' -54.4 NC_003085.1 + 18873 0.68 0.624453
Target:  5'- gCGAA--GgCugAUGGAGCCGG-GCGa -3'
miRNA:   3'- -GCUUugUgGugUACCUCGGCCaCGCg -5'
11409 3' -54.4 NC_003085.1 + 19684 0.71 0.433497
Target:  5'- aGAAGCauGCCGCca-GGGCCaGUGCGCa -3'
miRNA:   3'- gCUUUG--UGGUGuacCUCGGcCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 20097 0.66 0.712752
Target:  5'- uGAcgUGCCGCAgguggcggggcUGGAGuCCGGccuagaggcgcUGCGCa -3'
miRNA:   3'- gCUuuGUGGUGU-----------ACCUC-GGCC-----------ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 20601 0.68 0.602235
Target:  5'- uCGGcAGCGCCGC--GGaAGUCGGgcgGCGCg -3'
miRNA:   3'- -GCU-UUGUGGUGuaCC-UCGGCCa--CGCG- -5'
11409 3' -54.4 NC_003085.1 + 22468 0.69 0.53649
Target:  5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3'
miRNA:   3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 22865 0.68 0.635577
Target:  5'- cCGGcAGCGCCcACAggugguaccgaGGAGCCuGGUGCGa -3'
miRNA:   3'- -GCU-UUGUGG-UGUa----------CCUCGG-CCACGCg -5'
11409 3' -54.4 NC_003085.1 + 25736 0.71 0.433497
Target:  5'- --cGGCGCCACGgugGGGGCCGGgGcCGUc -3'
miRNA:   3'- gcuUUGUGGUGUa--CCUCGGCCaC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 25895 0.67 0.701879
Target:  5'- gGAcGCGCUucucCAgaagauUGG-GCCGGUGCGUg -3'
miRNA:   3'- gCUuUGUGGu---GU------ACCuCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 26108 0.7 0.473413
Target:  5'- uGggGCugCGCcucGGcGGCCGGcgGCGCu -3'
miRNA:   3'- gCuuUGugGUGua-CC-UCGGCCa-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 29383 0.66 0.74484
Target:  5'- -aGAACGCCAUGgcGGAGuuGcUGCGCc -3'
miRNA:   3'- gcUUUGUGGUGUa-CCUCggCcACGCG- -5'
11409 3' -54.4 NC_003085.1 + 30528 0.66 0.74484
Target:  5'- gGAGGCGgCGCGUGGAGCacaGcagGCGa -3'
miRNA:   3'- gCUUUGUgGUGUACCUCGg--Cca-CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.