miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 3' -54.4 NC_003085.1 + 494 0.7 0.473413
Target:  5'- gCGAGGCugaggGCCuGCGuuUGGAGCCGGUGUc- -3'
miRNA:   3'- -GCUUUG-----UGG-UGU--ACCUCGGCCACGcg -5'
11409 3' -54.4 NC_003085.1 + 13836 0.7 0.483681
Target:  5'- -cAGACGCCGCccagGGAaguGCCGGaUGUGCg -3'
miRNA:   3'- gcUUUGUGGUGua--CCU---CGGCC-ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 34963 0.7 0.504527
Target:  5'- gGAGGCGCCucACA-GGaAGCCGaugaccucGUGCGCa -3'
miRNA:   3'- gCUUUGUGG--UGUaCC-UCGGC--------CACGCG- -5'
11409 3' -54.4 NC_003085.1 + 39582 0.7 0.515094
Target:  5'- --cGGCGCCAC-UGGcaAGCUGGaGCGCg -3'
miRNA:   3'- gcuUUGUGGUGuACC--UCGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 15180 0.69 0.580123
Target:  5'- --uGACgGCC-CGgcuGAGCCGGUGCGCc -3'
miRNA:   3'- gcuUUG-UGGuGUac-CUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 9719 0.68 0.587846
Target:  5'- cCGGAACGCCuguguguccucggcGuCAUGGAGuCCaGG-GCGCg -3'
miRNA:   3'- -GCUUUGUGG--------------U-GUACCUC-GG-CCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 18873 0.68 0.624453
Target:  5'- gCGAA--GgCugAUGGAGCCGG-GCGa -3'
miRNA:   3'- -GCUUugUgGugUACCUCGGCCaCGCg -5'
11409 3' -54.4 NC_003085.1 + 40658 0.68 0.635577
Target:  5'- gGcuGCGCCGCGcaaccucgcGGAGCCGccgGCGCa -3'
miRNA:   3'- gCuuUGUGGUGUa--------CCUCGGCca-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 12467 0.67 0.690935
Target:  5'- uGggGCGCCAgCAgugcccugcUGGAGUCGaagcgGCGCc -3'
miRNA:   3'- gCuuUGUGGU-GU---------ACCUCGGCca---CGCG- -5'
11409 3' -54.4 NC_003085.1 + 35326 0.68 0.646697
Target:  5'- aCGGGuACACCGCG-GGcAGCaCGGUGaUGCc -3'
miRNA:   3'- -GCUU-UGUGGUGUaCC-UCG-GCCAC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 706 0.68 0.646697
Target:  5'- aCGggGCAacuCCGCGUGGcGCCuGacGCGCc -3'
miRNA:   3'- -GCuuUGU---GGUGUACCuCGGcCa-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 3693 0.68 0.645586
Target:  5'- gCGAguccuGACGCCGCGUccGGuGCUGGUGgugacgaCGCa -3'
miRNA:   3'- -GCU-----UUGUGGUGUA--CCuCGGCCAC-------GCG- -5'
11409 3' -54.4 NC_003085.1 + 15601 0.68 0.624453
Target:  5'- aCGAGuCGCCgugcaguugacuACGUGG-GCCGGUG-GCc -3'
miRNA:   3'- -GCUUuGUGG------------UGUACCuCGGCCACgCG- -5'
11409 3' -54.4 NC_003085.1 + 3649 0.66 0.711669
Target:  5'- aGGGACGCUGCAcugguggcgagguUGGAGgCaGGgacgGCGCg -3'
miRNA:   3'- gCUUUGUGGUGU-------------ACCUCgG-CCa---CGCG- -5'
11409 3' -54.4 NC_003085.1 + 2398 0.66 0.712752
Target:  5'- cCGAcaugGACACCGCc--GAGCUGGUggugacgaagacGCGCu -3'
miRNA:   3'- -GCU----UUGUGGUGuacCUCGGCCA------------CGCG- -5'
11409 3' -54.4 NC_003085.1 + 2020 0.66 0.734245
Target:  5'- uCGAcGCGCaggACAUGGAGCaguuuGGcccGCGCg -3'
miRNA:   3'- -GCUuUGUGg--UGUACCUCGg----CCa--CGCG- -5'
11409 3' -54.4 NC_003085.1 + 5958 0.66 0.74484
Target:  5'- cCGuccACGCCGgGcugcUGGAGgCGGUGgGCc -3'
miRNA:   3'- -GCuu-UGUGGUgU----ACCUCgGCCACgCG- -5'
11409 3' -54.4 NC_003085.1 + 11407 0.66 0.755319
Target:  5'- gCGAcGCACCACcacauGUCGG-GCGCa -3'
miRNA:   3'- -GCUuUGUGGUGuaccuCGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 8660 0.66 0.755319
Target:  5'- cCGGGACG-CGCGUGGccuugggcGCCGGgGUGCc -3'
miRNA:   3'- -GCUUUGUgGUGUACCu-------CGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 47623 1.12 0.00069
Target:  5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3'
miRNA:   3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.