miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 3' -54.4 NC_003085.1 + 26108 0.7 0.473413
Target:  5'- uGggGCugCGCcucGGcGGCCGGcgGCGCu -3'
miRNA:   3'- gCuuUGugGUGua-CC-UCGGCCa-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 22468 0.69 0.53649
Target:  5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3'
miRNA:   3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 7603 0.69 0.580123
Target:  5'- uCGgcGCACCGCgagGUGGAccagcGCCGG-GCGg -3'
miRNA:   3'- -GCuuUGUGGUG---UACCU-----CGGCCaCGCg -5'
11409 3' -54.4 NC_003085.1 + 47623 1.12 0.00069
Target:  5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3'
miRNA:   3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 2488 0.7 0.494053
Target:  5'- gCGAAACGCUcaagGCGUGGcugacGGaCGGUGUGCc -3'
miRNA:   3'- -GCUUUGUGG----UGUACC-----UCgGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 9833 0.68 0.591162
Target:  5'- gCGAAguuGCGCCACuccUGcGGCCaccugcucGGUGCGCu -3'
miRNA:   3'- -GCUU---UGUGGUGu--ACcUCGG--------CCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 34542 0.92 0.019612
Target:  5'- uGGAGCGCCACGcgcUGGcGGCCGGUGCGCa -3'
miRNA:   3'- gCUUUGUGGUGU---ACC-UCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 44668 0.68 0.591162
Target:  5'- cCGAuGCACaCGCAgUGGGGCUGGa-CGCa -3'
miRNA:   3'- -GCUuUGUG-GUGU-ACCUCGGCCacGCG- -5'
11409 3' -54.4 NC_003085.1 + 20601 0.68 0.602235
Target:  5'- uCGGcAGCGCCGC--GGaAGUCGGgcgGCGCg -3'
miRNA:   3'- -GCU-UUGUGGUGuaCC-UCGGCCa--CGCG- -5'
11409 3' -54.4 NC_003085.1 + 32535 0.69 0.547304
Target:  5'- gCGggGCcuugcccuCCACGggcgGGGGCUGGgGUGCg -3'
miRNA:   3'- -GCuuUGu-------GGUGUa---CCUCGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 37657 0.69 0.547304
Target:  5'- uCGggGCACCcgGCgAUGGGGCagccgacacgccCGGaGCGCg -3'
miRNA:   3'- -GCuuUGUGG--UG-UACCUCG------------GCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 40658 0.68 0.635577
Target:  5'- gGcuGCGCCGCGcaaccucgcGGAGCCGccgGCGCa -3'
miRNA:   3'- gCuuUGUGGUGUa--------CCUCGGCca-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 36409 0.68 0.646697
Target:  5'- aCGGAAagucacccuCCGCAcGGAGCCGGgacucaccGUGCg -3'
miRNA:   3'- -GCUUUgu-------GGUGUaCCUCGGCCa-------CGCG- -5'
11409 3' -54.4 NC_003085.1 + 22865 0.68 0.635577
Target:  5'- cCGGcAGCGCCcACAggugguaccgaGGAGCCuGGUGCGa -3'
miRNA:   3'- -GCU-UUGUGG-UGUa----------CCUCGG-CCACGCg -5'
11409 3' -54.4 NC_003085.1 + 20097 0.66 0.712752
Target:  5'- uGAcgUGCCGCAgguggcggggcUGGAGuCCGGccuagaggcgcUGCGCa -3'
miRNA:   3'- gCUuuGUGGUGU-----------ACCUC-GGCC-----------ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 13836 0.7 0.483681
Target:  5'- -cAGACGCCGCccagGGAaguGCCGGaUGUGCg -3'
miRNA:   3'- gcUUUGUGGUGua--CCU---CGGCC-ACGCG- -5'
11409 3' -54.4 NC_003085.1 + 30528 0.66 0.74484
Target:  5'- gGAGGCGgCGCGUGGAGCacaGcagGCGa -3'
miRNA:   3'- gCUUUGUgGUGUACCUCGg--Cca-CGCg -5'
11409 3' -54.4 NC_003085.1 + 43735 0.66 0.74484
Target:  5'- gCGGGACACCcgaGCcgGGuccGCCccgguGGUGgGCg -3'
miRNA:   3'- -GCUUUGUGG---UGuaCCu--CGG-----CCACgCG- -5'
11409 3' -54.4 NC_003085.1 + 29383 0.66 0.74484
Target:  5'- -aGAACGCCAUGgcGGAGuuGcUGCGCc -3'
miRNA:   3'- gcUUUGUGGUGUa-CCUCggCcACGCG- -5'
11409 3' -54.4 NC_003085.1 + 1494 0.66 0.755319
Target:  5'- cCGu--CGCCAgccucGGCCGGUGCGCc -3'
miRNA:   3'- -GCuuuGUGGUguaccUCGGCCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.