Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11409 | 3' | -54.4 | NC_003085.1 | + | 37115 | 0.66 | 0.758438 |
Target: 5'- aGcGACACCauguggcGCGUGcccuugcccagguucGGGUCGGUGUGCg -3' miRNA: 3'- gCuUUGUGG-------UGUAC---------------CUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 37657 | 0.69 | 0.547304 |
Target: 5'- uCGggGCACCcgGCgAUGGGGCagccgacacgccCGGaGCGCg -3' miRNA: 3'- -GCuuUGUGG--UG-UACCUCG------------GCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 22468 | 0.69 | 0.53649 |
Target: 5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3' miRNA: 3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 47623 | 1.12 | 0.00069 |
Target: 5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3' miRNA: 3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 2020 | 0.66 | 0.734245 |
Target: 5'- uCGAcGCGCaggACAUGGAGCaguuuGGcccGCGCg -3' miRNA: 3'- -GCUuUGUGg--UGUACCUCGg----CCa--CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 2398 | 0.66 | 0.712752 |
Target: 5'- cCGAcaugGACACCGCc--GAGCUGGUggugacgaagacGCGCu -3' miRNA: 3'- -GCU----UUGUGGUGuacCUCGGCCA------------CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 12467 | 0.67 | 0.690935 |
Target: 5'- uGggGCGCCAgCAgugcccugcUGGAGUCGaagcgGCGCc -3' miRNA: 3'- gCuuUGUGGU-GU---------ACCUCGGCca---CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 35326 | 0.68 | 0.646697 |
Target: 5'- aCGGGuACACCGCG-GGcAGCaCGGUGaUGCc -3' miRNA: 3'- -GCUU-UGUGGUGUaCC-UCG-GCCAC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 15601 | 0.68 | 0.624453 |
Target: 5'- aCGAGuCGCCgugcaguugacuACGUGG-GCCGGUG-GCc -3' miRNA: 3'- -GCUUuGUGG------------UGUACCuCGGCCACgCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 7603 | 0.69 | 0.580123 |
Target: 5'- uCGgcGCACCGCgagGUGGAccagcGCCGG-GCGg -3' miRNA: 3'- -GCuuUGUGGUG---UACCU-----CGGCCaCGCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 20601 | 0.68 | 0.602235 |
Target: 5'- uCGGcAGCGCCGC--GGaAGUCGGgcgGCGCg -3' miRNA: 3'- -GCU-UUGUGGUGuaCC-UCGGCCa--CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 3693 | 0.68 | 0.645586 |
Target: 5'- gCGAguccuGACGCCGCGUccGGuGCUGGUGgugacgaCGCa -3' miRNA: 3'- -GCU-----UUGUGGUGUA--CCuCGGCCAC-------GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 8660 | 0.66 | 0.755319 |
Target: 5'- cCGGGACG-CGCGUGGccuugggcGCCGGgGUGCc -3' miRNA: 3'- -GCUUUGUgGUGUACCu-------CGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 44668 | 0.68 | 0.591162 |
Target: 5'- cCGAuGCACaCGCAgUGGGGCUGGa-CGCa -3' miRNA: 3'- -GCUuUGUG-GUGU-ACCUCGGCCacGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 11407 | 0.66 | 0.755319 |
Target: 5'- gCGAcGCACCACcacauGUCGG-GCGCa -3' miRNA: 3'- -GCUuUGUGGUGuaccuCGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 706 | 0.68 | 0.646697 |
Target: 5'- aCGggGCAacuCCGCGUGGcGCCuGacGCGCc -3' miRNA: 3'- -GCuuUGU---GGUGUACCuCGGcCa-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 9833 | 0.68 | 0.591162 |
Target: 5'- gCGAAguuGCGCCACuccUGcGGCCaccugcucGGUGCGCu -3' miRNA: 3'- -GCUU---UGUGGUGu--ACcUCGG--------CCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 32535 | 0.69 | 0.547304 |
Target: 5'- gCGggGCcuugcccuCCACGggcgGGGGCUGGgGUGCg -3' miRNA: 3'- -GCuuUGu-------GGUGUa---CCUCGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 5958 | 0.66 | 0.74484 |
Target: 5'- cCGuccACGCCGgGcugcUGGAGgCGGUGgGCc -3' miRNA: 3'- -GCuu-UGUGGUgU----ACCUCgGCCACgCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 3649 | 0.66 | 0.711669 |
Target: 5'- aGGGACGCUGCAcugguggcgagguUGGAGgCaGGgacgGCGCg -3' miRNA: 3'- gCUUUGUGGUGU-------------ACCUCgG-CCa---CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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