Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11409 | 3' | -54.4 | NC_003085.1 | + | 45854 | 0.67 | 0.679934 |
Target: 5'- gCGgcGCAcguCCAgGcGGAGCCGGUGgGg -3' miRNA: 3'- -GCuuUGU---GGUgUaCCUCGGCCACgCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 9833 | 0.68 | 0.591162 |
Target: 5'- gCGAAguuGCGCCACuccUGcGGCCaccugcucGGUGCGCu -3' miRNA: 3'- -GCUU---UGUGGUGu--ACcUCGG--------CCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 44668 | 0.68 | 0.591162 |
Target: 5'- cCGAuGCACaCGCAgUGGGGCUGGa-CGCa -3' miRNA: 3'- -GCUuUGUG-GUGU-ACCUCGGCCacGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 20601 | 0.68 | 0.602235 |
Target: 5'- uCGGcAGCGCCGC--GGaAGUCGGgcgGCGCg -3' miRNA: 3'- -GCU-UUGUGGUGuaCC-UCGGCCa--CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 9719 | 0.68 | 0.587846 |
Target: 5'- cCGGAACGCCuguguguccucggcGuCAUGGAGuCCaGG-GCGCg -3' miRNA: 3'- -GCUUUGUGG--------------U-GUACCUC-GG-CCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 35326 | 0.68 | 0.646697 |
Target: 5'- aCGGGuACACCGCG-GGcAGCaCGGUGaUGCc -3' miRNA: 3'- -GCUU-UGUGGUGUaCC-UCG-GCCAC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 706 | 0.68 | 0.646697 |
Target: 5'- aCGggGCAacuCCGCGUGGcGCCuGacGCGCc -3' miRNA: 3'- -GCuuUGU---GGUGUACCuCGGcCa-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 3693 | 0.68 | 0.645586 |
Target: 5'- gCGAguccuGACGCCGCGUccGGuGCUGGUGgugacgaCGCa -3' miRNA: 3'- -GCU-----UUGUGGUGUA--CCuCGGCCAC-------GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 15601 | 0.68 | 0.624453 |
Target: 5'- aCGAGuCGCCgugcaguugacuACGUGG-GCCGGUG-GCc -3' miRNA: 3'- -GCUUuGUGG------------UGUACCuCGGCCACgCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 36409 | 0.68 | 0.646697 |
Target: 5'- aCGGAAagucacccuCCGCAcGGAGCCGGgacucaccGUGCg -3' miRNA: 3'- -GCUUUgu-------GGUGUaCCUCGGCCa-------CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 48880 | 0.68 | 0.602235 |
Target: 5'- uCGAGACACCcuGCGgcgGGGGCCGcccUGCa- -3' miRNA: 3'- -GCUUUGUGG--UGUa--CCUCGGCc--ACGcg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 22865 | 0.68 | 0.635577 |
Target: 5'- cCGGcAGCGCCcACAggugguaccgaGGAGCCuGGUGCGa -3' miRNA: 3'- -GCU-UUGUGG-UGUa----------CCUCGG-CCACGCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 40658 | 0.68 | 0.635577 |
Target: 5'- gGcuGCGCCGCGcaaccucgcGGAGCCGccgGCGCa -3' miRNA: 3'- gCuuUGUGGUGUa--------CCUCGGCca-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 18873 | 0.68 | 0.624453 |
Target: 5'- gCGAA--GgCugAUGGAGCCGG-GCGa -3' miRNA: 3'- -GCUUugUgGugUACCUCGGCCaCGCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 37657 | 0.69 | 0.547304 |
Target: 5'- uCGggGCACCcgGCgAUGGGGCagccgacacgccCGGaGCGCg -3' miRNA: 3'- -GCuuUGUGG--UG-UACCUCG------------GCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 10179 | 0.69 | 0.53649 |
Target: 5'- gCGAGACACCGCAgcgccguaGAGgaGGcGCGCa -3' miRNA: 3'- -GCUUUGUGGUGUac------CUCggCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 15180 | 0.69 | 0.580123 |
Target: 5'- --uGACgGCC-CGgcuGAGCCGGUGCGCc -3' miRNA: 3'- gcuUUG-UGGuGUac-CUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 22468 | 0.69 | 0.53649 |
Target: 5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3' miRNA: 3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 32535 | 0.69 | 0.547304 |
Target: 5'- gCGggGCcuugcccuCCACGggcgGGGGCUGGgGUGCg -3' miRNA: 3'- -GCuuUGu-------GGUGUa---CCUCGGCCaCGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 7603 | 0.69 | 0.580123 |
Target: 5'- uCGgcGCACCGCgagGUGGAccagcGCCGG-GCGg -3' miRNA: 3'- -GCuuUGUGGUG---UACCU-----CGGCCaCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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