Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11409 | 3' | -54.4 | NC_003085.1 | + | 29383 | 0.66 | 0.74484 |
Target: 5'- -aGAACGCCAUGgcGGAGuuGcUGCGCc -3' miRNA: 3'- gcUUUGUGGUGUa-CCUCggCcACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 26108 | 0.7 | 0.473413 |
Target: 5'- uGggGCugCGCcucGGcGGCCGGcgGCGCu -3' miRNA: 3'- gCuuUGugGUGua-CC-UCGGCCa-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 25895 | 0.67 | 0.701879 |
Target: 5'- gGAcGCGCUucucCAgaagauUGG-GCCGGUGCGUg -3' miRNA: 3'- gCUuUGUGGu---GU------ACCuCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 25736 | 0.71 | 0.433497 |
Target: 5'- --cGGCGCCACGgugGGGGCCGGgGcCGUc -3' miRNA: 3'- gcuUUGUGGUGUa--CCUCGGCCaC-GCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 22865 | 0.68 | 0.635577 |
Target: 5'- cCGGcAGCGCCcACAggugguaccgaGGAGCCuGGUGCGa -3' miRNA: 3'- -GCU-UUGUGG-UGUa----------CCUCGG-CCACGCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 22468 | 0.69 | 0.53649 |
Target: 5'- cCGu-GCACCACucgcGGuagcccAGCCGGcUGCGCa -3' miRNA: 3'- -GCuuUGUGGUGua--CC------UCGGCC-ACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 20601 | 0.68 | 0.602235 |
Target: 5'- uCGGcAGCGCCGC--GGaAGUCGGgcgGCGCg -3' miRNA: 3'- -GCU-UUGUGGUGuaCC-UCGGCCa--CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 20097 | 0.66 | 0.712752 |
Target: 5'- uGAcgUGCCGCAgguggcggggcUGGAGuCCGGccuagaggcgcUGCGCa -3' miRNA: 3'- gCUuuGUGGUGU-----------ACCUC-GGCC-----------ACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 19684 | 0.71 | 0.433497 |
Target: 5'- aGAAGCauGCCGCca-GGGCCaGUGCGCa -3' miRNA: 3'- gCUUUG--UGGUGuacCUCGGcCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 18873 | 0.68 | 0.624453 |
Target: 5'- gCGAA--GgCugAUGGAGCCGG-GCGa -3' miRNA: 3'- -GCUUugUgGugUACCUCGGCCaCGCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 18754 | 0.67 | 0.701879 |
Target: 5'- cCGAAGcCGCCGC-UGGAGC-GG-GCGa -3' miRNA: 3'- -GCUUU-GUGGUGuACCUCGgCCaCGCg -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 16316 | 0.7 | 0.524681 |
Target: 5'- aGAGGCGCCACGUacuggucGaGAGCCuGcgGCGCu -3' miRNA: 3'- gCUUUGUGGUGUA-------C-CUCGGcCa-CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 15601 | 0.68 | 0.624453 |
Target: 5'- aCGAGuCGCCgugcaguugacuACGUGG-GCCGGUG-GCc -3' miRNA: 3'- -GCUUuGUGG------------UGUACCuCGGCCACgCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 15180 | 0.69 | 0.580123 |
Target: 5'- --uGACgGCC-CGgcuGAGCCGGUGCGCc -3' miRNA: 3'- gcuUUG-UGGuGUac-CUCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 14819 | 0.66 | 0.712752 |
Target: 5'- gCGAGGCcAUCGC--GGAG-UGGUGCGCc -3' miRNA: 3'- -GCUUUG-UGGUGuaCCUCgGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 13836 | 0.7 | 0.483681 |
Target: 5'- -cAGACGCCGCccagGGAaguGCCGGaUGUGCg -3' miRNA: 3'- gcUUUGUGGUGua--CCU---CGGCC-ACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 12698 | 0.71 | 0.443295 |
Target: 5'- gGAuGACGCCACGcc--GCUGGUGCGCu -3' miRNA: 3'- gCU-UUGUGGUGUaccuCGGCCACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 12467 | 0.67 | 0.690935 |
Target: 5'- uGggGCGCCAgCAgugcccugcUGGAGUCGaagcgGCGCc -3' miRNA: 3'- gCuuUGUGGU-GU---------ACCUCGGCca---CGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 12347 | 0.72 | 0.386473 |
Target: 5'- aGGGcacGCGCCACAUGGuGUCGcUGUGCc -3' miRNA: 3'- gCUU---UGUGGUGUACCuCGGCcACGCG- -5' |
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11409 | 3' | -54.4 | NC_003085.1 | + | 11407 | 0.66 | 0.755319 |
Target: 5'- gCGAcGCACCACcacauGUCGG-GCGCa -3' miRNA: 3'- -GCUuUGUGGUGuaccuCGGCCaCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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