miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 3' -54.4 NC_003085.1 + 48880 0.68 0.602235
Target:  5'- uCGAGACACCcuGCGgcgGGGGCCGcccUGCa- -3'
miRNA:   3'- -GCUUUGUGG--UGUa--CCUCGGCc--ACGcg -5'
11409 3' -54.4 NC_003085.1 + 47715 0.67 0.679934
Target:  5'- uCGAcuGCugCGCcUGcugacGGGCgCGGUGCGCg -3'
miRNA:   3'- -GCUu-UGugGUGuAC-----CUCG-GCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 47623 1.12 0.00069
Target:  5'- cCGAAACACCACAUGGAGCCGGUGCGCu -3'
miRNA:   3'- -GCUUUGUGGUGUACCUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 45854 0.67 0.679934
Target:  5'- gCGgcGCAcguCCAgGcGGAGCCGGUGgGg -3'
miRNA:   3'- -GCuuUGU---GGUgUaCCUCGGCCACgCg -5'
11409 3' -54.4 NC_003085.1 + 45404 0.79 0.155938
Target:  5'- gCGGAGCGCCgucagcgaaaGCAUGGGGCgCGGUGgCGUc -3'
miRNA:   3'- -GCUUUGUGG----------UGUACCUCG-GCCAC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 44668 0.68 0.591162
Target:  5'- cCGAuGCACaCGCAgUGGGGCUGGa-CGCa -3'
miRNA:   3'- -GCUuUGUG-GUGU-ACCUCGGCCacGCG- -5'
11409 3' -54.4 NC_003085.1 + 43735 0.66 0.74484
Target:  5'- gCGGGACACCcgaGCcgGGuccGCCccgguGGUGgGCg -3'
miRNA:   3'- -GCUUUGUGG---UGuaCCu--CGG-----CCACgCG- -5'
11409 3' -54.4 NC_003085.1 + 40658 0.68 0.635577
Target:  5'- gGcuGCGCCGCGcaaccucgcGGAGCCGccgGCGCa -3'
miRNA:   3'- gCuuUGUGGUGUa--------CCUCGGCca-CGCG- -5'
11409 3' -54.4 NC_003085.1 + 40558 0.72 0.414286
Target:  5'- uCGAGGCGCaagGCcuUGGuGgCGGUGCGCa -3'
miRNA:   3'- -GCUUUGUGg--UGu-ACCuCgGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 39582 0.7 0.515094
Target:  5'- --cGGCGCCAC-UGGcaAGCUGGaGCGCg -3'
miRNA:   3'- gcuUUGUGGUGuACC--UCGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 39494 0.73 0.326544
Target:  5'- uCGAGGCGCU-CGaGaAGCCGGUGCGCc -3'
miRNA:   3'- -GCUUUGUGGuGUaCcUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 37657 0.69 0.547304
Target:  5'- uCGggGCACCcgGCgAUGGGGCagccgacacgccCGGaGCGCg -3'
miRNA:   3'- -GCuuUGUGG--UG-UACCUCG------------GCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 37115 0.66 0.758438
Target:  5'- aGcGACACCauguggcGCGUGcccuugcccagguucGGGUCGGUGUGCg -3'
miRNA:   3'- gCuUUGUGG-------UGUAC---------------CUCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 36409 0.68 0.646697
Target:  5'- aCGGAAagucacccuCCGCAcGGAGCCGGgacucaccGUGCg -3'
miRNA:   3'- -GCUUUgu-------GGUGUaCCUCGGCCa-------CGCG- -5'
11409 3' -54.4 NC_003085.1 + 35326 0.68 0.646697
Target:  5'- aCGGGuACACCGCG-GGcAGCaCGGUGaUGCc -3'
miRNA:   3'- -GCUU-UGUGGUGUaCC-UCG-GCCAC-GCG- -5'
11409 3' -54.4 NC_003085.1 + 34963 0.7 0.504527
Target:  5'- gGAGGCGCCucACA-GGaAGCCGaugaccucGUGCGCa -3'
miRNA:   3'- gCUUUGUGG--UGUaCC-UCGGC--------CACGCG- -5'
11409 3' -54.4 NC_003085.1 + 34542 0.92 0.019612
Target:  5'- uGGAGCGCCACGcgcUGGcGGCCGGUGCGCa -3'
miRNA:   3'- gCUUUGUGGUGU---ACC-UCGGCCACGCG- -5'
11409 3' -54.4 NC_003085.1 + 32535 0.69 0.547304
Target:  5'- gCGggGCcuugcccuCCACGggcgGGGGCUGGgGUGCg -3'
miRNA:   3'- -GCuuUGu-------GGUGUa---CCUCGGCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 32218 0.67 0.668887
Target:  5'- gCGcAACACCGCccaGAGCaCGGgGCGCc -3'
miRNA:   3'- -GCuUUGUGGUGuacCUCG-GCCaCGCG- -5'
11409 3' -54.4 NC_003085.1 + 30528 0.66 0.74484
Target:  5'- gGAGGCGgCGCGUGGAGCacaGcagGCGa -3'
miRNA:   3'- gCUUUGUgGUGUACCUCGg--Cca-CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.