miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 3' -60.8 NC_003085.1 + 931 0.68 0.281652
Target:  5'- uCCUggagcGUCGGccGCGuccgggugccagacAGGCCGCUGCCGg -3'
miRNA:   3'- uGGA-----CAGCCacCGC--------------UUCGGCGACGGC- -5'
11410 3' -60.8 NC_003085.1 + 8153 0.7 0.23165
Target:  5'- gGCgUGUCGGUgGGCGugaggucgucgaaGAGCCGCUgggcGCUGu -3'
miRNA:   3'- -UGgACAGCCA-CCGC-------------UUCGGCGA----CGGC- -5'
11410 3' -60.8 NC_003085.1 + 8216 0.67 0.328006
Target:  5'- aGCCUGccgCGcGUGGCguuguaGAGGCCGCacgucaccgUGCCa -3'
miRNA:   3'- -UGGACa--GC-CACCG------CUUCGGCG---------ACGGc -5'
11410 3' -60.8 NC_003085.1 + 9137 0.69 0.270068
Target:  5'- cUCUGggagCGGcaccUGGCGGAGCuCGCcGCCGc -3'
miRNA:   3'- uGGACa---GCC----ACCGCUUCG-GCGaCGGC- -5'
11410 3' -60.8 NC_003085.1 + 10758 0.66 0.39464
Target:  5'- cACCgGUaCGuG-GGCGAAGCCGCguUGUCa -3'
miRNA:   3'- -UGGaCA-GC-CaCCGCUUCGGCG--ACGGc -5'
11410 3' -60.8 NC_003085.1 + 11358 0.67 0.351166
Target:  5'- cACCUccgagacGaUGGUGGCGgcGCCggacaccugcGCUGCCGu -3'
miRNA:   3'- -UGGA-------CaGCCACCGCuuCGG----------CGACGGC- -5'
11410 3' -60.8 NC_003085.1 + 12405 0.68 0.290774
Target:  5'- -gCUGcUCGacccGGCGggGCCGCUGCg- -3'
miRNA:   3'- ugGAC-AGCca--CCGCuuCGGCGACGgc -5'
11410 3' -60.8 NC_003085.1 + 12817 0.66 0.377181
Target:  5'- cCCUGaCGGUccgGGCGGaugcgcuguuGGCCGCcaaUGCCa -3'
miRNA:   3'- uGGACaGCCA---CCGCU----------UCGGCG---ACGGc -5'
11410 3' -60.8 NC_003085.1 + 13715 0.66 0.402666
Target:  5'- aGCCUGUUccuguuccgucgaGGUcacGCGAAGCCGCccaacgggagGCCGu -3'
miRNA:   3'- -UGGACAG-------------CCAc--CGCUUCGGCGa---------CGGC- -5'
11410 3' -60.8 NC_003085.1 + 14919 0.68 0.283737
Target:  5'- gGCCgGcUGGUGGCGcucgcGGCCGCUGUg- -3'
miRNA:   3'- -UGGaCaGCCACCGCu----UCGGCGACGgc -5'
11410 3' -60.8 NC_003085.1 + 15839 0.67 0.351985
Target:  5'- cGCCUGU-GGUGGCccagacuucGAAgGCCGUUGgCGu -3'
miRNA:   3'- -UGGACAgCCACCG---------CUU-CGGCGACgGC- -5'
11410 3' -60.8 NC_003085.1 + 17266 0.71 0.174501
Target:  5'- uACCUGcuUCGGagggaugGGCGAugaggaugcGCCGCUGCUGg -3'
miRNA:   3'- -UGGAC--AGCCa------CCGCUu--------CGGCGACGGC- -5'
11410 3' -60.8 NC_003085.1 + 17523 0.68 0.312703
Target:  5'- gACCUGUcCGGUGaUGAaggcaccgGGCUGCUGCUc -3'
miRNA:   3'- -UGGACA-GCCACcGCU--------UCGGCGACGGc -5'
11410 3' -60.8 NC_003085.1 + 18004 0.66 0.368649
Target:  5'- uCCUGUCcGacgGcGCGAGGCCGUacgUGCCa -3'
miRNA:   3'- uGGACAGcCa--C-CGCUUCGGCG---ACGGc -5'
11410 3' -60.8 NC_003085.1 + 18349 0.69 0.244329
Target:  5'- cGCgCUGcUCGG-GGUuGAGCCGCUcGCCGc -3'
miRNA:   3'- -UG-GAC-AGCCaCCGcUUCGGCGA-CGGC- -5'
11410 3' -60.8 NC_003085.1 + 20102 0.7 0.209577
Target:  5'- uGCCgca-GGUGGCGggGCUGgaGuCCGg -3'
miRNA:   3'- -UGGacagCCACCGCuuCGGCgaC-GGC- -5'
11410 3' -60.8 NC_003085.1 + 20345 0.67 0.351985
Target:  5'- cGCCUGguucCGcGccGCGucGCCGCUGCUGa -3'
miRNA:   3'- -UGGACa---GC-CacCGCuuCGGCGACGGC- -5'
11410 3' -60.8 NC_003085.1 + 21806 0.74 0.119703
Target:  5'- cGCCguaGUCGGUGGCGAugcGGCguccCGCUGgCGg -3'
miRNA:   3'- -UGGa--CAGCCACCGCU---UCG----GCGACgGC- -5'
11410 3' -60.8 NC_003085.1 + 22704 0.73 0.126416
Target:  5'- uCCgGUUGGUGGCGAagGGCCGCcgGuuGa -3'
miRNA:   3'- uGGaCAGCCACCGCU--UCGGCGa-CggC- -5'
11410 3' -60.8 NC_003085.1 + 22774 0.72 0.160706
Target:  5'- cGCCg--CGGUGGCGAcggcagcggcaacGGCCGCUcCCGc -3'
miRNA:   3'- -UGGacaGCCACCGCU-------------UCGGCGAcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.