Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11410 | 3' | -60.8 | NC_003085.1 | + | 23020 | 0.67 | 0.343856 |
Target: 5'- uCCUGgcgcccagaGGUucgcgagcagugGGCGAAGCUGCcGCCGg -3' miRNA: 3'- uGGACag-------CCA------------CCGCUUCGGCGaCGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 24141 | 0.66 | 0.412614 |
Target: 5'- cACCuUGUCGGUGGCcaccacGgcGUCGUccaccugGCCGg -3' miRNA: 3'- -UGG-ACAGCCACCG------CuuCGGCGa------CGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 24746 | 0.66 | 0.403564 |
Target: 5'- --gUGUUGGcacccGCGAAGCCGCcgaUGCCGc -3' miRNA: 3'- uggACAGCCac---CGCUUCGGCG---ACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 25175 | 0.72 | 0.156889 |
Target: 5'- gGCCUGguggCGGUGGCGAugAGCgccaaCGUcGCCGa -3' miRNA: 3'- -UGGACa---GCCACCGCU--UCG-----GCGaCGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 25569 | 0.66 | 0.412614 |
Target: 5'- uUCUG-CGcGUGGac-GGCUGCUGCCGu -3' miRNA: 3'- uGGACaGC-CACCgcuUCGGCGACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 26669 | 0.72 | 0.156889 |
Target: 5'- uCCUGggCGGgagcGGcCGuuGCCGCUGCCGu -3' miRNA: 3'- uGGACa-GCCa---CC-GCuuCGGCGACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 27612 | 0.71 | 0.174501 |
Target: 5'- gGCCUGcgCGGUGuGUGGAGCCugggggGCUcGCCGc -3' miRNA: 3'- -UGGACa-GCCAC-CGCUUCGG------CGA-CGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 27784 | 0.66 | 0.403564 |
Target: 5'- cACCUcGUCcuGGaGGCgcuGAAGCCggauGCUGCCGa -3' miRNA: 3'- -UGGA-CAG--CCaCCG---CUUCGG----CGACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 28607 | 0.66 | 0.403564 |
Target: 5'- cGCCgGUgGuGUGGCGcucgcuGCUGCgGCCGg -3' miRNA: 3'- -UGGaCAgC-CACCGCuu----CGGCGaCGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 31779 | 0.68 | 0.276835 |
Target: 5'- aGCgUG-CGGUugGGCGAAGCgGCccgGCCGc -3' miRNA: 3'- -UGgACaGCCA--CCGCUUCGgCGa--CGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 35931 | 0.66 | 0.383233 |
Target: 5'- aACCcGUCGGgguagcgcuuGCGGAgcuucucgacguucGCCGCUGCCa -3' miRNA: 3'- -UGGaCAGCCac--------CGCUU--------------CGGCGACGGc -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 40215 | 0.67 | 0.357756 |
Target: 5'- cACCUGgcuggcccucgccaUUGGUGGCGGGcucuucGCCGCcgggGCCu -3' miRNA: 3'- -UGGAC--------------AGCCACCGCUU------CGGCGa---CGGc -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 40343 | 0.7 | 0.209577 |
Target: 5'- uGCCUcaGUgGGcGGUGGgcaAGCCGCUGCUGc -3' miRNA: 3'- -UGGA--CAgCCaCCGCU---UCGGCGACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 40481 | 0.7 | 0.209577 |
Target: 5'- uCCUGUCGcugcUGGCGGgcgucgucgAGCCGgaGCCGc -3' miRNA: 3'- uGGACAGCc---ACCGCU---------UCGGCgaCGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 40482 | 0.7 | 0.232241 |
Target: 5'- uACCggGcCGGUGaaguccGCGAGGCCGCgGCCc -3' miRNA: 3'- -UGGa-CaGCCAC------CGCUUCGGCGaCGGc -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 47138 | 0.73 | 0.140141 |
Target: 5'- aACCgaugaagcggcgGcCGGUGGCGAGGCaggccagcgccgUGCUGCCGg -3' miRNA: 3'- -UGGa-----------CaGCCACCGCUUCG------------GCGACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 47509 | 1.07 | 0.000333 |
Target: 5'- aACCUGUCGGUGGCGAAGCCGCUGCCGu -3' miRNA: 3'- -UGGACAGCCACCGCUUCGGCGACGGC- -5' |
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11410 | 3' | -60.8 | NC_003085.1 | + | 48515 | 0.66 | 0.377181 |
Target: 5'- gACCUccuucUCGGcGGCGAGGgCGCggGCCu -3' miRNA: 3'- -UGGAc----AGCCaCCGCUUCgGCGa-CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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