miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 22033 0.66 0.49609
Target:  5'- -cGAAGgGCUGCGCUGuaccggcgauUGcGCC-CGCg -3'
miRNA:   3'- gaCUUCgCGGCGCGACu---------AC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 22528 0.71 0.254911
Target:  5'- -cGAAGCGCCGCGCguacaugcaGGCCA-ACg -3'
miRNA:   3'- gaCUUCGCGGCGCGacua-----CCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 23306 0.67 0.455507
Target:  5'- aUGggGUGCCGCuGgaGAUG-CUugACg -3'
miRNA:   3'- gACuuCGCGGCG-CgaCUACcGGugUG- -5'
11411 3' -58.1 NC_003085.1 + 23364 0.66 0.485785
Target:  5'- -gGAGGCaGCCGUGUcccaGGCCAUGCg -3'
miRNA:   3'- gaCUUCG-CGGCGCGacuaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 24125 0.68 0.385496
Target:  5'- -gGAAGCG-CGCGCcauccaccuugucGGUGGCCACcACg -3'
miRNA:   3'- gaCUUCGCgGCGCGa------------CUACCGGUG-UG- -5'
11411 3' -58.1 NC_003085.1 + 25133 0.71 0.243302
Target:  5'- --aGAGCGCCGCGgaGAugucguUGGCCAUg- -3'
miRNA:   3'- gacUUCGCGGCGCgaCU------ACCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 25221 0.67 0.40742
Target:  5'- gCUGGuaccucaucaccGGCGCCGCcCUGGUGcGCUcCGCg -3'
miRNA:   3'- -GACU------------UCGCGGCGcGACUAC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 25772 0.67 0.455507
Target:  5'- -gGAGGCuGCUGCGCg---GGCC-CGCu -3'
miRNA:   3'- gaCUUCG-CGGCGCGacuaCCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 26093 0.66 0.506493
Target:  5'- uUGggGuCGaaGUGCUGG-GGCUGCGCc -3'
miRNA:   3'- gACuuC-GCggCGCGACUaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 28850 0.66 0.489895
Target:  5'- -cGAAGCGCCG-GCUGAcgcucaccuugggcgUuuGGCCGUACa -3'
miRNA:   3'- gaCUUCGCGGCgCGACU---------------A--CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 31491 0.66 0.49609
Target:  5'- cCUGcGGC-CCGCGCUGccggcgcuucagGUGGCCcCAg -3'
miRNA:   3'- -GACuUCGcGGCGCGAC------------UACCGGuGUg -5'
11411 3' -58.1 NC_003085.1 + 31537 0.72 0.20776
Target:  5'- --aGAGCGCCGCGCUG--GGCgCAgGCa -3'
miRNA:   3'- gacUUCGCGGCGCGACuaCCG-GUgUG- -5'
11411 3' -58.1 NC_003085.1 + 32238 0.66 0.514881
Target:  5'- -cGggGCGCCGCGUgcucaccaGCgGCGCu -3'
miRNA:   3'- gaCuuCGCGGCGCGacuac---CGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 32813 0.7 0.269023
Target:  5'- gUGAAGCagcggcuGUCGCGaCUGAUuggggcccgagaGGCCGCGCg -3'
miRNA:   3'- gACUUCG-------CGGCGC-GACUA------------CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 34541 0.8 0.056951
Target:  5'- uUGGAGCGCCacGCGCUGgcGGCCgguGCGCa -3'
miRNA:   3'- gACUUCGCGG--CGCGACuaCCGG---UGUG- -5'
11411 3' -58.1 NC_003085.1 + 34684 0.71 0.239532
Target:  5'- gCUGAcuuucgaugucaacaGGCGCCG-GUUGcAUGGCCACGg -3'
miRNA:   3'- -GACU---------------UCGCGGCgCGAC-UACCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 35172 0.75 0.126947
Target:  5'- aCUGAGggcuGCGCgGCGCuUGAcggcagcagccUGGCCGCACg -3'
miRNA:   3'- -GACUU----CGCGgCGCG-ACU-----------ACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 35398 0.7 0.305148
Target:  5'- -cGAGGCGCU-CGCaGAUGGCCucgacggACACg -3'
miRNA:   3'- gaCUUCGCGGcGCGaCUACCGG-------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 37848 0.72 0.213356
Target:  5'- cCUGGuAGCGCUgccuGCGCUGGccGGCCAgACg -3'
miRNA:   3'- -GACU-UCGCGG----CGCGACUa-CCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 38068 0.67 0.435897
Target:  5'- gUGguGCGUCGCGgaGAcGGCaGCGCa -3'
miRNA:   3'- gACuuCGCGGCGCgaCUaCCGgUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.