miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 9973 0.66 0.475583
Target:  5'- -aGAAGCgGCCagcuucCGCUGAcGGCCuACGCc -3'
miRNA:   3'- gaCUUCG-CGGc-----GCGACUaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 10725 0.68 0.389095
Target:  5'- gCUGAcggcaagcGGaCGCUGuUGCUGuccGGCCACACg -3'
miRNA:   3'- -GACU--------UC-GCGGC-GCGACua-CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 11441 0.66 0.49609
Target:  5'- -gGAAGCgGUCGcCGUUGG-GGCCgACGCg -3'
miRNA:   3'- gaCUUCG-CGGC-GCGACUaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 11886 0.71 0.243302
Target:  5'- cCUGAGcGCGCCGaGUUcAUGGCCAgGCg -3'
miRNA:   3'- -GACUU-CGCGGCgCGAcUACCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 12818 0.67 0.406492
Target:  5'- cCUGAcgguccgGGCGgaUGCGCUGuUGGCCGC-Ca -3'
miRNA:   3'- -GACU-------UCGCg-GCGCGACuACCGGUGuG- -5'
11411 3' -58.1 NC_003085.1 + 13098 0.68 0.389095
Target:  5'- aCUGGcaCGCCGCGCUGA-GGUgcgugaGCGCg -3'
miRNA:   3'- -GACUucGCGGCGCGACUaCCGg-----UGUG- -5'
11411 3' -58.1 NC_003085.1 + 14682 0.69 0.345711
Target:  5'- -gGAGGCGCCgugGCGCUGGacgaaGGCCAa-- -3'
miRNA:   3'- gaCUUCGCGG---CGCGACUa----CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 15121 0.74 0.167418
Target:  5'- aUGGAGCGCCGCGCcGcGUGGUgcgacgaGCACg -3'
miRNA:   3'- gACUUCGCGGCGCGaC-UACCGg------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 16156 0.66 0.475583
Target:  5'- cCUGAA-UGaCCGUGacgccgUGGUGGCCGCGCu -3'
miRNA:   3'- -GACUUcGC-GGCGCg-----ACUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 16833 0.67 0.455507
Target:  5'- cCUGGAG-GCUGCGCuUGAuguccucaaucUGGCUcaGCGCg -3'
miRNA:   3'- -GACUUCgCGGCGCG-ACU-----------ACCGG--UGUG- -5'
11411 3' -58.1 NC_003085.1 + 17139 0.67 0.445642
Target:  5'- aCUGGacGGCGUcugcuacuggCGCGCUGAggcggacgUGGCC-CACc -3'
miRNA:   3'- -GACU--UCGCG----------GCGCGACU--------ACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 17666 0.73 0.175834
Target:  5'- -gGAGGCGCUgGCGCUGAgaccgacgacgcGGCCAgGCa -3'
miRNA:   3'- gaCUUCGCGG-CGCGACUa-----------CCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 17967 0.76 0.11029
Target:  5'- cCUGAAGCGCCggcaGCGCg---GGCCGCAg -3'
miRNA:   3'- -GACUUCGCGG----CGCGacuaCCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 18104 0.67 0.425322
Target:  5'- -gGAAGCgGCUGCGCaUGgcGGCCuaccgguacguccGCGCg -3'
miRNA:   3'- gaCUUCG-CGGCGCG-ACuaCCGG-------------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 18832 0.67 0.454515
Target:  5'- cCUGAGGaguacuaCGCCGCGCUGAaguucguguucGGCCAg-- -3'
miRNA:   3'- -GACUUC-------GCGGCGCGACUa----------CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 19221 0.69 0.321395
Target:  5'- gCUG-GGCGCCGCGCaa--GGCCuGCGCc -3'
miRNA:   3'- -GACuUCGCGGCGCGacuaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 19518 0.66 0.49609
Target:  5'- gCUGGAGgGCCuGUGCc-AUGGCCAUcuGCu -3'
miRNA:   3'- -GACUUCgCGG-CGCGacUACCGGUG--UG- -5'
11411 3' -58.1 NC_003085.1 + 19904 0.66 0.516988
Target:  5'- -cGAAGaCGuCCGCGUUGGccugguugcUGGCCugcCACu -3'
miRNA:   3'- gaCUUC-GC-GGCGCGACU---------ACCGGu--GUG- -5'
11411 3' -58.1 NC_003085.1 + 21667 0.67 0.455507
Target:  5'- -gGGAGCGaCGCGCgGGUGaGCaucaGCGCg -3'
miRNA:   3'- gaCUUCGCgGCGCGaCUAC-CGg---UGUG- -5'
11411 3' -58.1 NC_003085.1 + 21925 0.67 0.445642
Target:  5'- -----cCGCCGcCGgaGAUGGCCACGa -3'
miRNA:   3'- gacuucGCGGC-GCgaCUACCGGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.