Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11411 | 3' | -58.1 | NC_003085.1 | + | 31491 | 0.66 | 0.49609 |
Target: 5'- cCUGcGGC-CCGCGCUGccggcgcuucagGUGGCCcCAg -3' miRNA: 3'- -GACuUCGcGGCGCGAC------------UACCGGuGUg -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 17139 | 0.67 | 0.445642 |
Target: 5'- aCUGGacGGCGUcugcuacuggCGCGCUGAggcggacgUGGCC-CACc -3' miRNA: 3'- -GACU--UCGCG----------GCGCGACU--------ACCGGuGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 7503 | 0.67 | 0.455507 |
Target: 5'- -gGAAGCGCagGUGCgucucGGUGGCgGCAa -3' miRNA: 3'- gaCUUCGCGg-CGCGa----CUACCGgUGUg -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 44283 | 0.67 | 0.455507 |
Target: 5'- ---cGGCGCCGCccugccuuccGCgccagGAUGGCCGCu- -3' miRNA: 3'- gacuUCGCGGCG----------CGa----CUACCGGUGug -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 23306 | 0.67 | 0.455507 |
Target: 5'- aUGggGUGCCGCuGgaGAUG-CUugACg -3' miRNA: 3'- gACuuCGCGGCG-CgaCUACcGGugUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 932 | 0.67 | 0.455507 |
Target: 5'- cCUGGAGCgucgGCCGCGUccgGGUG-CCAgACa -3' miRNA: 3'- -GACUUCG----CGGCGCGa--CUACcGGUgUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 18832 | 0.67 | 0.454515 |
Target: 5'- cCUGAGGaguacuaCGCCGCGCUGAaguucguguucGGCCAg-- -3' miRNA: 3'- -GACUUC-------GCGGCGCGACUa----------CCGGUgug -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 21667 | 0.67 | 0.455507 |
Target: 5'- -gGGAGCGaCGCGCgGGUGaGCaucaGCGCg -3' miRNA: 3'- gaCUUCGCgGCGCGaCUAC-CGg---UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 21925 | 0.67 | 0.445642 |
Target: 5'- -----cCGCCGcCGgaGAUGGCCACGa -3' miRNA: 3'- gacuucGCGGC-GCgaCUACCGGUGUg -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 47168 | 0.67 | 0.416784 |
Target: 5'- -aGGccAGCGCCGUGCUGccgGaGCC-CGCg -3' miRNA: 3'- gaCU--UCGCGGCGCGACua-C-CGGuGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 40502 | 0.67 | 0.426277 |
Target: 5'- -cGAGGCcgcggcccuugGCCcaGCGCaGGuUGGCCACGCg -3' miRNA: 3'- gaCUUCG-----------CGG--CGCGaCU-ACCGGUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 16833 | 0.67 | 0.455507 |
Target: 5'- cCUGGAG-GCUGCGCuUGAuguccucaaucUGGCUcaGCGCg -3' miRNA: 3'- -GACUUCgCGGCGCG-ACU-----------ACCGG--UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 25772 | 0.67 | 0.455507 |
Target: 5'- -gGAGGCuGCUGCGCg---GGCC-CGCu -3' miRNA: 3'- gaCUUCG-CGGCGCGacuaCCGGuGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 12818 | 0.67 | 0.406492 |
Target: 5'- cCUGAcgguccgGGCGgaUGCGCUGuUGGCCGC-Ca -3' miRNA: 3'- -GACU-------UCGCg-GCGCGACuACCGGUGuG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 25221 | 0.67 | 0.40742 |
Target: 5'- gCUGGuaccucaucaccGGCGCCGCcCUGGUGcGCUcCGCg -3' miRNA: 3'- -GACU------------UCGCGGCGcGACUAC-CGGuGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 18104 | 0.67 | 0.425322 |
Target: 5'- -gGAAGCgGCUGCGCaUGgcGGCCuaccgguacguccGCGCg -3' miRNA: 3'- gaCUUCG-CGGCGCG-ACuaCCGG-------------UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 38068 | 0.67 | 0.435897 |
Target: 5'- gUGguGCGUCGCGgaGAcGGCaGCGCa -3' miRNA: 3'- gACuuCGCGGCGCgaCUaCCGgUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 45225 | 0.67 | 0.454515 |
Target: 5'- -cGAAGCGCUGCggcccgGCUGAcGcucagcguaacccGCCGCGCg -3' miRNA: 3'- gaCUUCGCGGCG------CGACUaC-------------CGGUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 13098 | 0.68 | 0.389095 |
Target: 5'- aCUGGcaCGCCGCGCUGA-GGUgcgugaGCGCg -3' miRNA: 3'- -GACUucGCGGCGCGACUaCCGg-----UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 10725 | 0.68 | 0.389095 |
Target: 5'- gCUGAcggcaagcGGaCGCUGuUGCUGuccGGCCACACg -3' miRNA: 3'- -GACU--------UC-GCGGC-GCGACua-CCGGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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